Conserved Protein Domain Family
YccV-like

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smart00992: YccV-like 
Hemimethylated DNA-binding protein YccV like
YccV is a hemimethylated DNA binding protein which has been shown to regulate dnaA gene expression. The structure of one of the hypothetical proteins in this family has been solved and it forms a beta sheet structure with a terminating alpha helix.
Statistics
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PSSM-Id: 214961
Aligned: 47 rows
Threshold Bit Score: 72.2694
Created: 13-Jul-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
YP_001257563   9 AKYQIGQVVKHRLFPFRGVIFDVD---------PEFANTEEWYQNIPEDARP-R-----------R--DQP----FYH-L 60   Brucella ovis ...
XP_001374929 503 VCYSIGLIMKHKRYGYNCVIYGWD---------PTCMMGHEWIRNMNVHSLP-Hg----------H--HQP----FYN-V 555  gray short-tai...
CAG08150     308 VQYSVGLIMKHKRSGYNCVIYGWD---------PKCTMNQEWITTMRVNLLP-N-----------Gp-QQP----FYN-V 360  spotted green ...
XP_002129491 444 VMFSVGTVTRHLKYGYVCVVRGWD---------NYCDMSVRWQRLMGIPQLN-Dg----------A--TQP----YYN-V 496  Ciona intestin...
NP_001021670  90 VEFRVGDVITHTKLNFRGVIIGWD---------EHAIAPEKFLKVAHGENKN-Y-----------A--TQP----NYA-V 141  nematode
CAG00085      24 VFLRVGEVVMETKGHMVGVVVSWD---------PELRAPQEWIDRVYSISEG-P-----------KaeNTP----HYK-V 77   spotted green ...
XP_757453    818 LAHRVGTIFRHRTYRYAGSILCWD---------PCCIAPEDWIVNMGVDRLP-AprtstmmgrggR--HQP----FYHsQ 881  Ustilago maydi...
XP_628106    546 PKFLVGQIVQHLWWNYYGVVVGWD---------WELNAPKQWADNIYQKYPPeS-----------R--KRP----HYL-L 598  Cryptosporidiu...
XP_386539    519 VLYKIGQVFKHRRYGWIGAVNGWTdqgtrrlpmPHTVAIDETLDDNSDTELP-N-----------R--LRPrnktFYT-C 583  Gibberella zea...
NP_498703     53 PTFEAGQIFIHKTFAYKGVVVCSF---------PCRLHEKRSQQN--EKHLL-T-----------R--D------FYQ-V 100  nematode
YP_001257563  61 LAENGE--T--------------E--YVA-------------------------------YVSE------QNLVPDL--S 83   Brucella ovis ...
XP_001374929 556 LVEDG---------------------SCR-------------------------------YAAQ------ENLEYNM--E 575  gray short-tai...
CAG08150     361 LVQDGT--C-------------------R-------------------------------YAAQ------ENLEPHS--A 380  spotted green ...
XP_002129491 497 LVHEDG--S--------------E--R---------------------------------YAAQ------ENLEVLK--G 517  Ciona intestin...
NP_001021670 142 LIDTRDrlT--------------P--QLS-------------------------------YIVQ------ENLEIDK--- 165  nematode
CAG00085      78 LFSGPG--Q--------------SsvIIG-------------------------------YLPQ------TQLERI---S 101  spotted green ...
XP_757453    882 VADGTL--R--------------Y--VAD-------------------------------VNVE------LIHGPIWi-Y 905  Ustilago maydi...
XP_628106    599 LVHQEE--TlfnnsspiesipsnL--THT-------------------------------YIPEialkhvPNLDSDNhfS 643  Cryptosporidiu...
XP_386539    584 LRTTGP--E--------------R--HV---------------------------------VAE------DNIVLIE--D 604  Gibberella zea...
NP_498703    101 LIHRYD--W--------------S--HMGfpvditsylvdapmenkrhgqkmltlingmdCVSH------EDIIPFT--P 154  nematode
YP_001257563  84 GE--PLRHpq----idEMLDRMD--N--GTFR 105  Brucella ovis ATCC 25840
XP_001374929 576 PQ--EISHpd----vgRYFSEFT--G--THYV 597  gray short-tailed opossum
CAG08150     381 PM--EIGHpe----vgRYFSEFA--N--SHYA 402  spotted green pufferfish
XP_002129491 518 GL--AVEHee----igKYFQSIK--Hddgkiy 541  Ciona intestinalis
NP_001021670 166 -G--TVMHpl----vdKFFDGFD--EkrQKYI 188  nematode
CAG00085     102 GM--RPDIpt----leNYFTHYD--G--ERFV 123  spotted green pufferfish
XP_757453    906 GL--PPNEstrrhsadEHVVEEG--R--TLgm 931  Ustilago maydis 521
XP_628106    644 NK--DIIInky---lnTYFSYWSeiH--QRFI 668  Cryptosporidium parvum Iowa II
XP_386539    605 PS--EIPDslfr-qagKFFKRFD--AetCTFV 631  Gibberella zeae PH-1
NP_498703    155 SGgvNFDHdl----fdHIFNASH--D--Gigl 178  nematode
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