2EYQ,2QSR


Conserved Protein Domain Family
TRCF

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smart00982: TRCF 
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This domain is found in proteins necessary for strand-specific repair in DNA such as TRCF in Escherichia coli.
A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by the transcription-repair-coupling factor (TRCF) which releases RNAP and the truncated transcript.
Statistics
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PSSM-Id: 198050
Aligned: 240 rows
Threshold Bit Score: 63.253
Created: 13-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2EYQ_A       1008 ELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKG 1087 Escherichia coli
YP_001356925  862 KLSVNAYISSEVVREDRLKLELYRRLAQVKEPEEIAQIQEEIEDRFGKLDSYTKNFLDLIHIKLLALEHGIKKISNYNQN 941  Nitratiruptor...
YP_001416    1042 tLNTNFFIPETYISDTRQKIEFYKKLEGARDLDEIEEIYSEMLDRFGEPPEDAKTFILLEKIRTLASNLGFEFVTEMKDE 1121 Leptospira in...
YP_394078     878 KLTISAFVSDEVVKEDRLRIDIYRRLSSCIDSVEIYEIQEEVIDRFGALDAPTKQFFELMVIKVLSLSKGIKSVSNYGQN 957  Sulfurimonas ...
ADU85531      880 qLSVSAFLNPELIASDSLRLDLYRRLSLCENVDEVGQIHEEIEDRFGKMDALSEQFLQIITLKILANELGILKLSNFNQN 959  Helicobacter ...
NP_859989     882 KINLNAYLNPQLIASDKLRLELYRRLSLCEEISEVNDIESEIFDRFGAPDTMSKAFLELICVKVLANKLRLKQIMHYGQN 961  Helicobacter ...
NP_907419     879 KLSINAFLSPELIESDRLRLELYRRLSRCESTQEVNEIEVEIHDRFGSPDLYTKQFLELILIKVLASLQGIKTITNYNQN 958  Wolinella suc...
YP_001359339  877 KLSIDAYLNEELIEEDRLRLELYRRLSLCETTGEVYEIEAEIADRFGKPDTITRQFIDVMVMKVLAKQQEISKVSSYGEN 956  Sulfurovum sp...
YP_001406057  866 kiaVNAFLNSDFIREDRLRLDLYRRLSKAETVSQVYEIFGEIEDRFGKADIYTKQFIDLMIIKILANSLNIKSITSAEQN 945  Campylobacter...
EFV07334      477 KLNVNAFLNSELISEDRLRLELYRRLSKCEQVHEVYEIESEIEDRFGKLDIYTKQFLSLITIKILALN-KFKSISNYEQN 555  Campylobacter...
2EYQ_A       1088 GVIEFAEKNHVNPAWLIGLL 1107 Escherichia coli
YP_001356925  942 ITFDFGDKketikarskddd 961  Nitratiruptor sp. SB155-2
YP_001416    1122 IKMKSGSYFRGDHTKIIQLI 1141 Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130
YP_394078     958 ITITYMDEKKEsiksdskdd 977  Sulfurimonas denitrificans DSM 1251
ADU85531      960 ITIAYSDENKESLKApskdd 979  Helicobacter pylori SouthAfrica7
NP_859989     962 ITITYMDNTKESIispskdw 981  Helicobacter hepaticus ATCC 51449
NP_907419     959 ITFFYRDETKKSFSAksrdd 978  Wolinella succinogenes DSM 1740
YP_001359339  957 VFIEFREEGKErvvlksnsk 976  Sulfurovum sp. NBC37-1
YP_001406057  946 ILITYANGEKMRLKssskdd 965  Campylobacter hominis ATCC BAA-381
EFV07334      556 IQFTALNDEKELIKAkskdd 575  Campylobacter jejuni subsp. jejuni DFVF1099
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