1UB4,2W1T,2K1N


Conserved Protein Domain Family
SpoVT_AbrB

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smart00966: SpoVT_AbrB 
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SpoVT / AbrB like domain
This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. AbrB is thought to interact directly with the transcription initiation regions of genes under its control. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator. DNA-binding activity in this AbrB homologue requires hexamerisation. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins.
Statistics
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PSSM-Id: 198034
Aligned: 384 rows
Threshold Bit Score: 27.0863
Created: 13-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1UB4_C        10 KRWGNSPAVRIPATLMQALNLNIDD--EVKIDLVDGKl-IIEp-vRKEP 54  Escherichia coli
YP_693092     11 QKISNGAGLRVPKTVLQHLGLDVGS--IVDMELTDEQl-IIRp-kPMPT 55  Alcanivorax borkumensis SK2
YP_001100377   7 RKAGGSLVMTIPKAFLEQNSLHEGS--QVEVLITGKRm-TIKa-tPRPR 51  Herminiimonas arsenicoxydans
NP_841048      6 RKAGGSLVMTVPKSFIEQNGLSEGS--QVELHLHGKKm-IVEapaRPRY 51  Nitrosomonas europaea ATCC 19718
YP_823807      7 RKVGGSVMLAVPPALLDILRLQPGV--RVGITIERGRl-VVEp-rQRPR 51  Solibacter usitatus Ellin6076
NP_929612      7 KRVGGSVMLTVPPALLNALSL--GSdnEVGMVIDNGRl-IVEp-hKRPQ 51  Photorhabdus luminescens subsp. laumondii TTO1
YP_033528      7 RKVGGSVMLSIPPALLDVLHLTENT--QVGLAVDNGQl-VVKp-qTISS 51  Bartonella henselae str. Houston-1
NP_353960      8 RRQGGAAVMTIPPALLKMLGLEIGE--QLTLEVDNGAl-VASp-vRLEK 52  Agrobacterium tumefaciens str. C58
YP_920998     12 IRISGGYYVALPKGWVEQLGL-AGS--YVKIEYLPDGslLVRp-aERGR 56  Thermofilum pendens Hrk 5
YP_001152779  11 KIKTGSFIVSLPREWVEKNGISAHD--PLLVFEDANNnvIIRipvTSCE 57  Pyrobaculum arsenaticum DSM 13514
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