1QZW,1ZU4,2XXA,1JPJ,2V3C,2J37,3DM5,1FTS


Conserved Protein Domain Family
SRP54_N

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smart00963: SRP54_N 
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SRP54-type protein, helical bundle domain
This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Statistics
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PSSM-Id: 214941
Aligned: 434 rows
Threshold Bit Score: 28.6712
Created: 13-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1QZW_A        13 IRDAVRKFLTGSTPYEKAVDEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSvLERKEWFISIVYDELSKLF 90  Sulfolobus solfat...
YP_001357684   9 FKNAIGKIRFHD--DEKALKKATAELKKSLLKADVHHKVVKDLISSVE----LETKKN-GVGKDNFLKALQDKLTDIL 79  Sulfurovum sp. NB...
ZP_03242339    9 FKNALNKIRFQD--DEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIG-----KQQFLDALEKSLLEIL 79  Helicobacter pylo...
YP_001490866   9 IRNAVNKIRYQDDITA--LNKATAELKKALLKADVHHKTTKELITAVELQTKT---AG--IGQDSFLKALKSELTRLL 79  Arcobacter butzle...
YP_001406144   9 FRAAVNKLRMIDDEKA--LKNALNTLKKALLKADVHHKVTKDFLTLVENDMKS---GV--VGQKQFLDSIKNNLTTVL 79  Campylobacter hom...
YP_001466989   9 FRLAVSKIRFVDDEKA--LKNALDVLKKALLKADVHHKVTKDLLASIESELKQ---TG--VGQKNFLDAIKSNLTTIL 79  Campylobacter con...
YP_892203      9 LKSAVNKLKFVDDEKA--LKNALDTLKKALLKADVHHKVTKELVNLVESDLKK---TS--IGQKQFLDSIKSNLTSIL 79  Campylobacter fet...
NP_860471      9 FKGIINKIRFSDDEKS--LQRACDELKKTLLKNDVYHKAVKQIIQEVQQRTKE---AG--IGKQNFINALQDALSKIL 79  Helicobacter hepa...
YP_001356969   9 FTSAIKKIRFKDDEKA--LKKALTELKKSLLKSDVHHKVVKELLQKVELDTKA---AG--IGRDTFLQALQKNLTEIL 79  Nitratiruptor sp....
YP_392966      9 FTNAIKKIRFNDDDKA--LTKALDELKKSLLRADVNHKVVKDLIFKVQIETKK---NG--IGKDQFLEALRNALYELL 79  Sulfurimonas deni...
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