3DMD,3DM5,2V3C,3B9Q,2J28,2NG1,1VMA,2J7P,1ZU4,2J37,2PX0


Conserved Protein Domain Family
SRP54

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smart00962: SRP54 
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SRP54-type protein, GTPase domain
This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Statistics
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PSSM-Id: 214940
Aligned: 503 rows
Threshold Bit Score: 102.487
Created: 13-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3DMD_B       129 PYVIMFVGFNGSGKTTTIAKLANWLK-NHgFSVVIAASDTFRAGAIEQLEEHAKRIGVkvikhsygadPAAVAYDAIQHA 207 Pyrococcus furi...
YP_001036917 209 PTVVMLVGPTGVGKTTTLAKIAANYSlNLnKNVGLITADTYRIAAVEQLKTYADILGM----------PLKVIYSANEIQ 278 Clostridium the...
YP_001320513 197 PQIIFFVGPTGVGKTTTIAKLAAHHAlNEgQSVGLISADTYRIAAVEQLRTYSDILNI----------PLEVVYKSSEIN 266 Alkaliphilus me...
YP_001180071 175 PQVVFFVGPTGVGKTTTIAKIAAKLMfEEgKKVGFITADTYRIAAVEQLKTYAEIMNI----------KTKVWYEVDEYD 244 Caldicellulosir...
YP_001086733 143 NGKIALVGPPGVGKTTTIAKLAAKLVfEEnKKVGVITIDTYRIGAVEQLKIYTDIMNI----------PFKGVISPDEME 212 Clostridium dif...
YP_001311318 250 SGRVVLVGPTGVGKTTTIAKLAGRLAlIEkKKVGLITVDTYRIGAIEQLKTYAEIMNI----------PFKVVITMKEME 319 Clostridium bei...
NP_348764    193 KGIITFVGPTGVGKTTTIAKLAGKFSlIEkKKVGLITVDTYRIGAVEQLRTYADIMNL----------PFKVVLTLKEMD 262 Clostridium ace...
YP_877993    215 KGVVALVGPTGVGKTTTIAKLAGRLAlIEkKKVGLITVDTYRIGAIEQLSTYASIMSI----------PFKSVFSIKEME 284 Clostridium nov...
NP_782259    181 KGAVVLVGPTGVGKTTTIAKLAGRLSlVEkKKVGLITVDTYRIGAVEQLKTYADIMKI----------PFKVVFSIKDME 250 Clostridium tet...
YP_001391945 212 GKVTVLVGPTGVGKTTTIAKLAGKLSlIDkKKVGLITIDTYRIGAVEQLKTYADIMNI----------PFKVVFSIKDME 281 Clostridium bot...
3DMD_B       208 Ka----RGIDVVLIDTAGRSETNRNLMDEMKKIARVtKp--NLVIFVGDALAGNAIVEQARQFNeaVKIDGIILTKLDAD 281 Pyrococcus furi...
YP_001036917 279 DaikeySDKDLILIDTAGRSYKNKEHFDELKTLVEV-TnadEIYLVLSTTTGMRNCREIIEHYSf-LENYKLIFTKLDES 356 Clostridium the...
YP_001320513 267 KaidnlKHKDLIFIDTAGRSHKNKEQILELETLLQQ-IeckEVYFVISCTTRTVDIKEMIKAYDf-LKDYKLIFTKLDEA 344 Alkaliphilus me...
YP_001180071 245 QiiksfDDSDVVLVDTAGRSHKNQEHMDELRAFVEK-AspdEVFLLLSATTQPSVFKEIVNTYSf-IDNYKVIITKVDEV 322 Caldicellulosir...
YP_001086733 213 LaldemKDCDVVLIDTTGRGYKNSMQILEIKNLIDK-AetdNIHLVLNCTTRESDTKAIIDSYRn-VNFKSLIITKLDET 290 Clostridium dif...
YP_001311318 320 DaieemNNCDVVLIDTTGRSSKNAMQISELRAFVQK-AnpdHVNMVISATTKNSDIKSILSGYSe-LEYDNIIITKLDET 397 Clostridium bei...
NP_348764    263 EaiksmQNCDIILVDTTGRSSKNKMQISELRAFVSK-TnslNINLVISATTKNRDLEAIIDGYRq-LDFQNVIITKLDET 340 Clostridium ace...
YP_877993    285 AalesmKDCEIILLDTTGRSSKNIMQIAELNAFVQK-AnskNVFLVISATTKNRDIESIIEGYKt-LNYTNVIITKLDET 362 Clostridium nov...
NP_782259    251 DaiedmKNCEVILVDTTGRSSKNVMQISELRAFIEK-VnseNIHLVISSTTKNKDIDSIVEGYKt-LGYKSVIITKLDET 328 Clostridium tet...
YP_001391945 282 KaiidlDYCDVILVDTTGRSSKNMMQISELRAFIEK-IkekSVHLVISASTKNKDIETIIKGYSi-LEYENIIITKLDET 359 Clostridium bot...
3DMD_B       282 ARGGAALSISYVIDAPILFVGVGQGYDD-LRPFEKEWFLERIFG 324 Pyrococcus furiosus
YP_001036917 357 SALGLILNSRRLTNRDLSFVTTGQSVPDdIELANVDMITKNLLG 400 Clostridium thermocellum ATCC 27405
YP_001320513 345 STFGTIINTAMFIQKPLSYITTGQSVPDdIEILDLDKIVDLIVK 388 Alkaliphilus metalliredigens QYMF
YP_001180071 323 STYGNILNIKHYTQKPIAYVTTGQNVPDdIQQFNPEHFAKLIIG 366 Caldicellulosiruptor saccharolyticus DSM 8903
YP_001086733 291 ITYGSIFNIMNYAQKPISYITTGQNVPDdIIKPNEDKIIRLLLG 334 Clostridium difficile 630
YP_001311318 398 TVYGSLYNIAKIANKPVSFITIGQNVPDdIMVPTKEEVASFILG 441 Clostridium beijerinckii NCIMB 8052
NP_348764    341 TTYGSIINILNYAHKPLSYVTTGQNVPDdIRRMAKGEIVSLVLG 384 Clostridium acetobutylicum ATCC 824
YP_877993    363 TTYGSILNILNSANKPLSFVTTGQNVPDdFKSITKEEVAKLVLG 406 Clostridium novyi NT
NP_782259    329 TTYGSILNIANSTKKPISFITTGQNVPEdIRLVTPKEITGLILG 372 Clostridium tetani E88
YP_001391945 360 SIYGSILTILDKGKKPISFITTGQDVPDdIKEGHKEEIAKIVLG 403 Clostridium botulinum F str. Langeland
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