2F8S,1W9H,1Z25


Conserved Protein Domain Family
Piwi

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smart00950: Piwi 
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This domain is found in the protein Piwi and its relatives.
The function of this domain is the dsRNA guided hydrolysis of ssRNA. Determination of the crystal structure of Argonaute reveals that PIWI is an RNase H domain, and identifies Argonaute as Slicer, the enzyme that cleaves mRNA in the RNAi RISC complex.. In addition, Mg+2 dependence and production of 3'-OH and 5' phosphate products are shared characteristics of RNaseH and RISC. The PIWI domain core has a tertiary structure belonging to the RNase H family of enzymes. RNase H fold proteins all have a five-stranded mixed beta-sheet surrounded by helices. By analogy to RNase H enzymes which cleave single-stranded RNA guided by the DNA strand in an RNA/DNA hybrid, the PIWI domain can be inferred to cleave single-stranded RNA, for example mRNA, guided by double stranded siRNA.
Statistics
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PSSM-Id: 214930
Aligned: 91 rows
Threshold Bit Score: 109.732
Created: 13-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2F8S_A        419 LVIVFLEEy--------pKVDPYKSFLLYDFVKRE-------------------LLKKMIPSQVIlnr---tlkNENLKF 468  Aquifex aeolicus
YP_400551     441 TVLVVMPWd--------sHHD-KQKIRIQAIQ-----------------------AGIATQFMVPlp------kADKYK- 481  Synechococcus...
CBZ33858      903 tsVILITNe--------iDTRATRWLKVECMCR-G-------------------AHFIAIPASSSpkk----lnLAGAQL 950  Leishmania do...
NP_681738     458 TVLVVMPWs-------------pHEEKTRLRIQAL-------------------KAGIATQFMIPtpq----dnPYK--- 498  Thermosynecho...
YP_475569     437 TVLVVMPWs--------pN-ERKQRIRMEALE-----------------------AGIATQFMIP---------GADPYK 475  Synechococcus...
1W9H_A        110 gIMLVLPEy---------NTPLYYKLKSYLINS---------------------IPSQFMRYDILs--------nRNLTF 151  Archaeoglobus...
NP_614594     422 vLVGVLSDd--------dRT--YARVKRR-----D-------------------PLVQCFTERVLsd-------gkTVKY 460  Methanopyrus ...
YP_001415349  145 VIVLALPIplieklvnakSEGEDSDDDVDGGDMLNfrdllkaktlhlpvptqivWPDTWDDAAKIprkikrdsnRQTQVK 224  Xanthobacter ...
XP_823303     558 FGVTFLRRp---------EREPYAEWKASWSGGG---------------------ALSQVVAKDLtg--------gRELS 599  Trypanosoma b...
YP_160003     430 LLLIGLG-----------RGADKRKIRNVAYR-----------------------YGLATQFMRLdh-----ppRTYQST 470  Azoarcus sp. ...
2F8S_A        469 VLLN--VAEQVLAKTGNIPYKLK----------EIEGKVDAFVGIDISRITRdGK-------T---VnaVAFTKIFNSk- 525  Aquifex aeolicus
YP_400551     482 -ALN--VTLGLLCKAGWQPIQLEs--------vDHPEVADLIIGFDTGTNRE-LY-------Y---G---TSAFAVLA-- 534  Synechococcus...
CBZ33858      951 RMRI--ASQFELNPLRGVDLRGEl--------pVLGHRHVLVIGVDSCHTNT-HS-------V---GtiVGILSTPTE-- 1007 Leishmania do...
NP_681738     499 -ALN--VALGLLCKAKWQPVYLKp--------lDDPQAADLIIGFDTSTNRR-LY-------Y---G---TSAFAILA-- 551  Thermosynecho...
YP_475569     476 -ALN--VVLGLLCKAAWQPVLLEp--------lDDPVGPELIIGFDVGTNRR-LY-------Y---G---ASAFAVLA-- 528  Synechococcus...
1W9H_A        152 YVDN--LLVQFVSKLGGKPWILNv--------dP-EKGSDIIIGTGATRIDN-VNl-------------FCFAMVFKK-- 204  Archaeoglobus...
NP_614594     461 AATV--LAVGIHCKHAGQPYAVRa--------tSGPKD-VAVVGVDVSRKVE-GG-------RvveGraCCSCFVVDE-- 519  Methanopyrus ...
YP_001415349  225 ATRAwnLLNALFYKAGKVPWRLLp---------dQAEYRTSFLGIGFYRDLD-GQ-----------QlwTSTAQMFDEr- 282  Xanthobacter ...
XP_823303     600 IVMA--VAQQICAKTGRLNWTLDvnqvcpklakAdPSGGILIIAADVGRDQR-SVatessavR---QefFAVAFVSFYvk 673  Trypanosoma b...
YP_160003     471 YYNN--LAAGVFSKGGGVLCAIDd----------MPGETDLFIGLDLGGVSQ-RAp------------gLAFLFTREGa- 524  Azoarcus sp. ...
2F8S_A        526 -----gEl--VRYYLTSYPAF------GEKL----TE-KAIGDVFSLLEKLGFk-----KGSKIVVHRDG-RLYRDE--- 578  Aquifex aeolicus
YP_400551     535 ------Dg--QSLGWELPAVQrg--etFSGQa---IW-QTVSKLIIKFYQI-Cq----rYPQKLLLMRDGlVQEGEFqqt 595  Synechococcus...
CBZ33858     1008 ------SkllSYFWRHDARGRet--qhVAKH----FR-GILAGAVALSg----------RVDEVVVFQDG-DVFSELvgv 1063 Leishmania do...
NP_681738     552 ------Ng--QSLGWELPDIQrg--etFSGQs---IW-QVVSKLVLKFQDNYd-----sYPKKILLMRDGlVQDGEFeqt 612  Thermosynecho...
YP_475569     529 ------Dg--QSLGWELPAVQrg--etFSGD----AIyQTVSKLVDRFYD-KLs----rYPSKVLLMRDG-LVQGGEfsr 588  Synechococcus...
1W9H_A        205 ------Dg--TMLWNEISPIVts--seYLTY----LK-STIKKVVYGFKKSNPd----wDVEKLTLHVSG-KRPKMKdge 264  Archaeoglobus...
NP_614594     520 ------Dg--LIEHGRTFTVPvgergeTSGR----TA-EIVLE--------TAr----eYSDRVVYLRDG-TVPGEE--- 570  Methanopyrus ...
YP_001415349  283 -----gRg--LILRGARAQTEtr--grHPYLtakdAE-DLVVQSIAAYKAHHRh-----VPARLVVLKTS-RFRSEeae- 345  Xanthobacter ...
XP_823303     674 gtqwstYc--NHYQVNGRKETly--adGSDCd--tTS-MSEGGPPTPSEVISKkmgefvQEAKSHFTSKG-NAVSAYlvl 745  Trypanosoma b...
YP_160003     525 ------Ql--GWQLAEAQRGErv--edAVLG-------DLLERSLQAYRQVHLg----aLPRRIALHRDG-RLFESLdvi 582  Azoarcus sp. ...
2F8S_A        579 ------------VAAFKKYGELYG----YSLELLEIIK----RNNPR---------------------FFSN-EK----- 611  Aquifex aeolicus
YP_400551     596 ----------------ieLLKERK----IAVDVISVRK----SGAGR---------------------MGQE-IYengql 629  Synechococcus...
CBZ33858     1064 ke-----eltmqVPNCGLTFMCLHk--rCNVRFMHASPgqdgSSATRsqasavasasddvekadrdtnAFRE-Dnglhn- 1134 Leishmania do...
NP_681738     613 ----------------ireLTHQG----IDVDILSVRK----SGSGR---------------------MGRElTSgntai 647  Thermosynecho...
YP_475569     589 ti---------------eeleKEK----IAVDIVGIRK----SGTGR---------------------MGIE-EGkgky- 622  Synechococcus...
1W9H_A        265 t--------kilKETVEELKKQEMvsrdVKYAILHLNE----THPFW---------------------VMGD-PNnrfhp 310  Archaeoglobus...
NP_614594     571 ------------LEAVREVGRELG----LDVTVVEVIK----SDPTV---------------------YAIE-GEgwra- 607  Methanopyrus ...
YP_001415349  346 ----------giDAALGKSGIEMS-------DLVWVQE----SSPIA---------------------IFRD-GNypvl- 381  Xanthobacter ...
XP_823303     746 rgcasegelldaRKSDVDVLSEVLk--gSSWAVVAGQR----YQHSR---------------------FAFQ-APddrtm 797  Trypanosoma b...
YP_160003     583 ---------rnfERDYS-----------VRVDVLEVVK----SGCPP---------------------LYRR-GVvaenk 616  Azoarcus sp. ...
2F8S_A        612 --------FIK-GYFYKLS--E-----DSVILATYNQVyE------GT---H-QPIKVRKVYGE-------LPVEVLCSQ 658  Aquifex aeolicus
YP_400551     630 ---vyrdaAIG-SVILQPA--E-----RSFIMVTSQPV-S------KTi--G-SIRPLRIVHEYg-----sTDLELLALQ 683  Synechococcus...
CBZ33858     1135 ---lvkgvVIP-ALAPVPL--DhqlaaNSFYLQAHESS-M------ST---A-RIVQYTVHHVSp-----sLDVTDVQQI 1192 Leishmania do...
NP_681738     648 ---tyddaEVG-TVIFYSA--T-----DSFILQTTEVI-KtktgplGS---A-RPL--RVVRHYg-----nTPLELLALQ 704  Thermosynecho...
YP_475569     623 -----kdaKIG-TVVFDYS--R-----KSFTLITSQPI-RkggnslGS---A-RPL--RAIHEHg-----kTPLEVLALQ 677  Synechococcus...
1W9H_A        311 ----yegtKVK-LSSKRYLltL-----LQPYLKRNGLE-M------VT---PiKPLSVEIVSDNwtseeyyHNVHEILDE 370  Archaeoglobus...
NP_614594     608 ----prgaYVRlDGSTVHL--C-----CSPYTPRRRGD-K------KP---G-TPRPIALRRRDd-----kLD-GDLIGL 659  Methanopyrus ...
YP_001415349  382 -----rgtFVD-LDGKGLL--Ytr-gsVPFYGTFPGLR-V------P------RPLLLVPHENSd------sTILTLAKD 433  Xanthobacter ...
XP_823303     798 ycnaprgfVTA-EGADKKF--G-----EAFFLTGANCT-L------Gh---A-RSTLYVVSKRKg------FDLGELQAL 852  Trypanosoma b...
YP_160003     617 k--afrnpEVG-DAFELPG--L-----DELIIATYSGE-E------LGsswG-DKVTVRPLRLRk-----rYGETDLHTL 673  Azoarcus sp. ...
2F8S_A        659 ILSLTLMNYSS-FQPI--K----LPATVHYSDKITKLMLRGIE 694  Aquifex aeolicus
YP_400551     684 TYHLTQLHPASgFRSC--R----LPWVLHLADRSSKEFQRigq 720  Synechococcus elongatus PCC 7942
CBZ33858     1193 ANIMA--NVLA-PQAT--K----LPMSTRCAHRLADQAERLLD 1226 Leishmania donovani BPK282A1
NP_681738     705 TYHLTQLHPASgFRSC--R----LPWVLHLADRSSKEFQRigq 741  Thermosynechococcus elongatus BP-1
YP_475569     678 TYHLSQLHPASgFQAC--R----LPWVLHFADKSGKEFQRLGD 714  Synechococcus sp. JA-3-3Ab
1W9H_A        371 IYYLSKMNWRG-FRSR--N----LPVTVNYPKLVAGIIANvnr 406  Archaeoglobus fulgidus
NP_614594     660 VHDLTASNWGN-PSGTwsR----LPAPVLYADRASRLARYGVs 697  Methanopyrus kandleri AV19
YP_001415349  434 VLALTKVNWNT-TQFDq-----kLPAPIKAAREVGRILKH-VE 469  Xanthobacter autotrophicus Py2
XP_823303     853 LYGMCFLYPNK-TDAL--P----LPLPLKCAAEYGRKYSALTN 888  Trypanosoma brucei TREU927
YP_160003     674 ARQVVLLSRIH-GASL--YrhprLPVTTHHADRFATLRQECNL 713  Azoarcus sp. EbN1
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