Conserved Protein Domain Family
Prim-Pol

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smart00943: Prim-Pol 
Bifunctional DNA primase/polymerase, N-terminal
Members of this family adopt a structure consisting of a core of antiparallel beta sheets. They are found in various bacterial hypothetical proteins, and have been shown to harbour both primase and polymerase activities.
Statistics
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PSSM-Id: 214927
Aligned: 55 rows
Threshold Bit Score: 71.991
Created: 13-Jul-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ZP_06388302    7 AKWFIDtL-GF-AVIP---I---------------D-R---------D--------TKK----------------P---- 28  Sulfolobus solf...
YP_290785     23 ALEYAA-L-GW-PVCR---G---------------AqP---------N--------REG----------------Pr--- 45  Thermobifida fu...
YP_939550     35 cniYAD-L-GWrGVIP---V---------------D-P---------R--------DKGg--------------vPa--- 59  Mycobacterium s...
NP_628567     25 AVRYAEeR-HW-DVFPgtwL---------------V-P---------G--------DGVqrcscedpacaapgahPa--- 66  Streptomyces co...
NP_825405     26 ALTFAA-EwKW-PVLP---G---------------V-ApdpqgrarcG--------CPD----------------Pe--- 57  Streptomyces av...
YP_001160171  24 avrYAL-H-GW-EVTP---Gafl---------arsR-F---------V--------CGRagcpt-------vgchPa--- 60  Salinispora tro...
YP_001102646  33 AIGFAS-R-GW-PVLP---Gtypvgtr-wigrdggE-A---------D--------GPM----------------Pv--- 68  Saccharopolyspo...
ZP_05523394   31 vvaefsglwGW-DVVP---GartaqgacscglpdcP-A---------P--------GAH----------------Pl--- 69  Streptomyces li...
YP_001071919  35 vNRYRL-A-GWlGTLP---L---------------P-A---------G--------KKN----------------Pp--- 57  Mycobacterium s...
NP_823829     31 AE-YTG-LwGW-DVVA---G---------------------------AraaagacsCGR----------------Aecvr 61  Streptomyces av...
ZP_06388302   29 ------T--I-----------------PNWQQYSTRAltdEEKEK-FPKM--IEEGyNY-----GIPGQMLDkn--raLV 73  Sulfolobus solf...
YP_290785     46 ------S--CtcdrlgcpapgvhpisaAWAMEASTDP---DTIRR-WWSA--TPEA-NI-----ILPTGRV-------FD 98  Thermobifida fu...
YP_939550     60 ------G--F-----------------TGYGGIDVTP---ENMAW-FAKS--KPGH-NI-----GLRL-PDG------VI 95  Mycobacterium s...
NP_628567     67 ------R--E-----------------DWAAQATGSA---TVARR-MWQK--QQSA-SI-----LLPTGRT-------FD 102 Streptomyces co...
NP_825405     58 ------C--Tvpga---------hpfdPGLLAATTDE---RMVRW-WWTN--RPTA-PI-----VLATGGKA------PC 102 Streptomyces av...
YP_001160171  61 ------L--V-----------------DWEHSASSDP---ARVAT-WWRT--RPHG--V-----LLPTGRA-------FD 95  Salinispora tro...
YP_001102646  69 ------H--Q-----------------DWEERLGTNP---DQVAA-WWSG--RPHS--L-----LLATGTA-------VN 103 Saccharopolyspo...
ZP_05523394   70 ------D--F-----------------APRVPAGATL---DEASE-AWSR--FPGA-AV-----MLAVGRT-------FD 105 Streptomyces li...
YP_001071919  58 ------PtgY-----------------TGHQASHPTR---AQIAA-WVGDpaRRGA-NIclrlaGIDCAPENridafeVV 109 Mycobacterium s...
NP_823829     62 pgahplD--F-----------------ATPLPAGATL---DEVTEaWA-E--VPGA-AV-----LLPVGRA-------FD 103 Streptomyces av...
ZP_06388302   74 ILDFEDKE----LLKAWIGE----SEL----NkLCQ-NTLCVTTPHNGLH--IYAITE-EFP---------EYKFNPAFl 128 Sulfolobus solf...
YP_290785     99 VLDVPTSA----GVMAMAQM----DRA----G-LT---LGPVAVLDSERY--LFFVAT-RSPidedewwscRLDCFPETv 159 Thermobifida fu...
YP_939550     96 GIDVDAYG----PKKGADTF----AEAqgrwG-ALP-PSYRSTSRDDGISgiRLYRVP-AGT---------KLETIIEFk 155 Mycobacterium s...
NP_628567    103 AIDVPETA----GFLALARM----QRM----E-LT---LGPVTLAPDRRM--RFFVLPgAGA---------KVPDLVRRl 155 Streptomyces co...
NP_825405    103 AVSLPALA----ASRALTAL----DQM----G-MRL-G-PVVATPH--RW--AILVAP-YSMeq-----lgELLYAKDYv 157 Streptomyces av...
YP_001160171  96 VLEVSAHL----GRDVLLAV----QNH----P-AGPgVRGPVLSTPTGRW--MFLVRP-GDP---------LRPELEHCf 150 Salinispora tro...
YP_001102646 104 AVEVDAAL----GYRAAVAL----RTL----G-F---PVPIVAVPNGR----WYFLTS-GGD---------RLAPELADl 153 Saccharopolyspo...
ZP_05523394  106 VIEVAEPA----GLRALARL----ERM----G-V---PLGPVAATPQGRA--QFFVAP-GAA---------AELPRLLYr 157 Streptomyces li...
YP_001071919 110 GIDVDHYAkggkDKRGGDQLakleAEL----G-PLP-ATWISSARVDGTSgiRYFRVP-AG------------LTFRGQv 170 Mycobacterium s...
NP_823829    104 VIEVAEAA----GRHALVRL----ERM----G-L---PLGPVTATPDGRA--HFFVAP-G-----------AAAELPELl 153 Streptomyces av...
ZP_06388302  129 renK---N-----V-----MD--LQ--S------LKSYVVAPGSCInhkfcdsakcpW-K-GQDYvtCYYADITPERAKI 183 Sulfolobus solf...
YP_290785    160 e-dM---P-----G-----LR--WH--C------RDSYIPAPPSLL-----------P-S-GRTV--EWIRSPYGRSTPV 200 Thermobifida fu...
YP_939550    156 ---D---------------LD--IR--DieivqrHHRHVQCWPSIH-----------DkT-GQRY--RWVSELDGSAMDT 199 Mycobacterium s...
NP_628567    156 ---G---W-----ApraldLG--VL--G------EGAYVAAPPTRF-----------G-A-RGAV--QWACRPTAVNRWL 199 Streptomyces co...
NP_825405    158 ---P---G-----S-----LR--FH--G------EGGYITLPPSET-----------G-H-GRI---GWERAPLPGSAAP 195 Streptomyces av...
YP_001160171 151 -------H-----V-----VR---H--G------PGSWIPAPPTRL-----------P-E-GAV---RWVVAPEQARWQL 186 Salinispora tro...
YP_001102646 154 -------T-----E-----VR--LH--G------AGSWVPMPPTTY-----------P-H-GAahwrvkpevcgwtlpsl 193 Saccharopolyspo...
ZP_05523394  158 ---M---GwddpaA-----LD--LR--Gl----gPGTYLTAPPSDR-----------G-G-RGPV--RWLRPPALDSATK 203 Streptomyces li...
YP_001071919 171 ---A---A-----D-----IEciYR--G------YRFAVVWPSTNP-----------D-AgGATY--WWFPPGTTPNAgg 212 Mycobacterium s...
NP_823829    154 yrmAwddT-----S-----LD--LRalG------PGTYITAPPSDLg----------G-L-GPV---RWLRSPALDSATn 200 Streptomyces av...
ZP_06388302  184 -NE 185 Sulfolobus solfataricus 98/2
YP_290785    201 hlp 203 Thermobifida fusca YX
YP_939550    200 -PP 201 Mycobacterium sp. KMS
NP_628567    200 -PD 201 Streptomyces coelicolor A3(2)
NP_825405    196 wvp 198 Streptomyces avermitilis MA-4680
YP_001160171 187 -PD 188 Salinispora tropica CNB-440
YP_001102646 194 dfv 196 Saccharopolyspora erythraea NRRL 2338
ZP_05523394  204 -PP 205 Streptomyces lividans TK24
YP_001071919 213 rka 215 Mycobacterium sp. JLS
NP_823829    201 ppA 203 Streptomyces avermitilis MA-4680
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