3H5Q,2DSJ,2WK5


Conserved Protein Domain Family
PYNP_C

?
smart00941: PYNP_C 
Click on image for an interactive view with Cn3D
Pyrimidine nucleoside phosphorylase C-terminal domain
This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as E. coli thymidine phosphorylase (TP). The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer.
Statistics
?
PSSM-Id: 214925
Aligned: 164 rows
Threshold Bit Score: 57.5471
Created: 13-Jul-2011
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
3H5Q_A    348 YVTELVSNDIGVASXXLGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIHSNRQ-DVDDVVKKLDSSITIA 421 Staphylococcus aureus s...
NP_384236 349 YLTSCKTRELGMAVIELGGGRIRPDDRIDHRVGLTGLRPLGTKVEKGEPIAFVHAADQsQAEAIAKRVVTLYAIA 423 Sinorhizobium meliloti ...
YP_268700 353 YIAQTDTRAIGMSVVGLGGGRTAPTQQVDHSVGFDRILPLGVQVNRGEVIARLHAKDEdSANRAIEQFNNAITYS 427 Colwellia psychrerythra...
NP_353169 349 WLASCATRDLGMVVVELGGGRTKPSDTINPAVGISDILPLGVRVEKGEPIAVVHAASSeDAERAVKRIEDCFGIA 423 Agrobacterium tumefacie...
YP_572886 367 TVNAIDTRALGLGVVELGGGRRNAGDAIDHRVGLSRIAGLGQRVERGQPLLRLHAASRaEADAVSRRLREAFTLG 441 Chromohalobacter salexi...
YP_613566 345 YVAAIDGEALGLLVVRLGGGRMVESDRIDPAVGISDLLHLGAKVARGDVIARVHAAHAeAAQDAISALRAAVRLA 419 Silicibacter sp. TM1040
YP_684118 346 RIAAIDGEALGLAVVNLGGGRRIETDKIDRRVGLTQVVRLGAAVRKGQPLAVVHASRPdDADRAVAAVRAAISLT 420 Roseobacter denitrifica...
YP_168137 346 YVTAIDGEVLGLAVVALGGGRQVETDVVDPAVGLSRVIRLGTAVNPGTPLATIHAARQeAAEAAEATLRAAITIG 420 Silicibacter pomeroyi D...
YP_916010 342 RVVAIDTEVLGHAVVALGGGRLHAGDRIDPRVGLAELLRIGEEAGPGRPLALVHAASDaAADAAVATVAAAYLLG 416 Paracoccus denitrifican...
YP_467745 347 WLAACDARGVGISVIDLGGGRRHPADRIDHRVGFSGLLPLGTRVNAGDPIAVVHAADEaAAEKAAAALAVHYRIA 421 Rhizobium etli CFN 42
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap