3IT9,1NZO,3A3J


Conserved Protein Domain Family
PBP5_C

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smart00936: PBP5_C 
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Penicillin-binding protein 5, C-terminal domain
Penicillin-binding protein 5 expressed by E. coli functions as a D-alanyl-D-alanine carboxypeptidase. It is composed of two domains that are oriented at approximately right angles to each other. The N-terminal domain (pfam00768) is the catalytic domain. The C-terminal domain featured in this family is organized into a sandwich of two anti-parallel beta-sheets, and has a relatively hydrophobic surface as compared to the N-terminal domain. Its precise function is unknown; it may mediate interactions with other cell wall-synthesising enzymes, thus allowing the protein to be recruited to areas of active cell wall synthesis. It may also function as a linker domain that positions the active site in the catalytic domain closer to the peptidoglycan layer, to allow it to interact with cell wall peptides.
Statistics
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PSSM-Id: 198004
Aligned: 233 rows
Threshold Bit Score: 39.1215
Created: 13-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3IT9_A       259 FETVTPIKPDATFVTQRVWFGDKSEVNLGAGEAGSVTIPRGQLKNLKAS--YTLTEPqLTAPLKKGQVVGTI-DFQLN-G 334
YP_001320340 280 YNTIEIAERDVFIGNINIQKGQESIVRGVAKEDLKVLVKKGEEDQVQKE--VILPQf-ANAPVLKGDKMGEV-IATIN-G 354 Alkaliphilus me...
YP_001394643 295 YTSINVLKKGDDIEKVNLNKGGDKFFMAKSSSDLKVTVEKGKENKITCR--CVINKNkRQ--YKKGEKVGYC-DVYID-G 368 Clostridium klu...
YP_878099    284 FESKKVVAKDSDVEKITLDKKGEKFFFAKAKDDLNLVLERGTKNKITKK--CVLDKGkKE--YKRGEIIGNC-EVYVN-D 357 Clostridium nov...
NP_782144    287 FENKNIIKRDSEVEKVKLGKSEDKFFIAKALEDLDVVVERGSKDKITKKpiVNLDKKy----YNKGEVVGHC-EVYVG-D 360 Clostridium tet...
YP_699090    279 FESKQVATKDGEIEQIPMNQTGDKFIIGKAKNDLTLVCPKGMSDKIEKK--VVLDESkKK--IKEFDTIGYC-EYYLD-G 352 Clostridium per...
YP_001391119 299 FECKTLVKKGDVISKVPLNSKGDKYFMAKSCEELDAIIEKGKKTKITNK--CIIDENkKE--YKINEEVGIC-EFYSD-G 372 Clostridium bot...
ZP_05328598  293 FHSKKIAHKGDIIETPCVDGIDDFKITVKVDKDLYGVVS--DNENINPK--VVFKNMnY--PIHKGDIVGVA-KYYNDsG 365 Clostridium dif...
NP_348682    294 FTAKKVVEKDSVVKKVALNKKGDKYFLIKAVDDLSVVIPKGENCNITNR--CLYKIDkKDKEIKKGAYIGYA-EYYVN-G 369 Clostridium ace...
ZP_05351324  293 FNMKKVIDKDSFIGKKYIKGMKELEVTLKAKDELYTILK--DDESIKSE--VKIKNIeY--PVKKGDTMGIIkYYTNS-G 365 Clostridium dif...
3IT9_A       335 KSIEQRPLIVMENVEE 350
YP_001320340 355 KEVGRVDIISESDIEK 370 Alkaliphilus metalliredigens QYMF
YP_001394643 369 ELKGKVDLHSDRDVKK 384 Clostridium kluyveri DSM 555
YP_878099    358 KLLGKVPVYSDRDIKt 373 Clostridium novyi NT
NP_782144    361 KLIGKVKLYSDRDIKK 376 Clostridium tetani E88
YP_699090    353 ELLGKVELYSDRDMKK 368 Clostridium perfringens SM101
YP_001391119 373 NLIGKVKITSDRNIRK 388 Clostridium botulinum F str. Langeland
ZP_05328598  366 KFVGSVDVKSESNIgc 381 Clostridium difficile QCD-63q42
NP_348682    370 KYAGKIKVYCDRDVKl 385 Clostridium acetobutylicum ATCC 824
ZP_05351324  366 DLLGSVDIVSNNSIDN 381 Clostridium difficile ATCC 43255
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