Conserved Protein Domain Family
D5_N

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smart00885: D5_N 
D5 N terminal like
This domain is found in D5 proteins of DNA viruses and bacteriophage P4 DNA primases phages.
Statistics
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PSSM-Id: 197953
Aligned: 76 rows
Threshold Bit Score: 43.121
Created: 13-Jul-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
YP_914163     73 ARRFVIHFGDDIL---F------V----SQVG----WFVW--D-------G--S--RWrkddeisrdvspliraqahkvs 122 Paracoccus deni...
YP_603404     62 ANVFREHCYFTFI---Gkg---eV----TDISk---LYMYhlD-------L--G--YY---------------------- 95  Streptococcus p...
YP_330673     44 AKMLSEIITFTFIsksN------V----PDYSl---LYIY--Dl-----dE--G--IY---------------------- 77  Streptococcus a...
ZP_04021443   58 tvtnilEYHIIWA---VlgndkeD----WQKSa---LYFY--N-------TesG--IY---------------------- 94  Lactobacillus a...
YP_254008     31 slfLYEEYHGCYI---D------N----RP-------HVF--T-------G--K--KY---------------------- 55  Staphylococcus ...
YP_141183     65 AKELSKIVTFTFItksN------T----PDNSl---LYMY--Dl-----dE--G--IY---------------------- 98  Streptococcus t...
YP_001038148 226 ARFIRDEEHIIKI---N------N----Q-------LHVY--K-------D--G--IY---------------------- 250 Clostridium the...
NP_691091    142 AIIMMSIFTFRNI---Q------T----TEREedtlLALH--DiskastkM--G--IY---------------------- 180 Oceanobacillus ...
NP_341700      1 MS-----KIGETP---L------DmglkDAIIg---IFIW--N-------K--EkgIF---------------------- 30  Sulfolobus solf...
NP_376178    351 EEITREHRLVTFK---G------KdqakEYVIg---LFRF--S-------K--KkgIY---------------------- 385 Sulfolobus toko...
YP_914163    123 tlilqeidwlqpndrdrkliEEDRDLKVRRREIENapgyaadeslmkelasIEARLraldaalkSYRNLTTRR------- 195 Paracoccus deni...
YP_603404     96 --------------------ISSED--LFRKLLLR----------------FDSRL--------T----SRRW------- 118 Streptococcus p...
YP_330673     78 --------------------TASND--LFNRFCKT----------------FDVRI--------KP-------------- 97  Streptococcus a...
ZP_04021443   95 --------------------EKDS--LLIEELINT----------------VEPQI--------TERN------------ 116 Lactobacillus a...
YP_254008     56 --------------------EPLN-IDVVRKMTIK----------------YIP-------------SLREQQ------- 78  Staphylococcus ...
YP_141183     99 --------------------TASAD--EFNVLCKT----------------FDNRI--------KPNDW----------- 121 Streptococcus t...
YP_001038148 251 --------------------KNS--TLEIESVMIK----------------HLPEL--------NKAKRNETI------- 277 Clostridium the...
NP_691091    181 --------------------NKSRG--YLYEVMER----------------LAPKF--------DQ-----RE------- 202 Oceanobacillus ...
NP_341700     31 --------------------EPFEN--RLRKKARA----------------LLEYY--------TDLANDELKpyviskt 64  Sulfolobus solf...
NP_376178    386 --------------------EPFDV--TIEKIIND----------------KLEEY------------RDFPLgsdk-tr 414 Sulfolobus toko...
YP_914163    196 -LTWAKDAGNSTRIAHMIAEARVMlaraVDDMDQGALDVNTLSGVLRFTripndpeagmTGmssvEL------------- 261 Paracoccus deni...
YP_603404    119 -LNEVFDYIRTET----------T----IRPAMEDYRYIPVANGVYNIQ----------TK----QL------------- 156 Streptococcus p...
YP_330673     98 -REWPQIKLMVRTLTRIKKPLE------------SAYLIPVQNGIIDLR----------TK----EL------------- 137 Streptococcus a...
ZP_04021443  117 -IKEVKSKLRIESKRLFLT--------------NDPNLYALGNGIFDAK----------KH----KL------------- 154 Lactobacillus a...
YP_254008     79 -NKEVFQKLKTLCLGNYQEQ-------------CSARYIGLKNGIYDTL----------EE----KL------------- 117 Staphylococcus ...
YP_141183    122 --KQIKMMVRTMTKISRPLE--------------SANLVPVQNGILDLK----------NK----EL------------- 158 Streptococcus t...
YP_001038148 278 -N-----------YLELITNNVIP----SFE---DYNRIAFNNGIYNII----------DD----SF------------- 311 Clostridium the...
NP_691091    203 -MDKVIHKIERSVPRVEQTK--------------ERHLFAVNNGIYDQK----------TR----QL------------- 240 Oceanobacillus ...
NP_341700     65 iIDNVVDEIKDKTLIPLPN---------------EPLRVAFPNCTLEWK----------IS----HGryvpsfvlaeert 115 Sulfolobus solf...
NP_376178    415 vVKNIKDEIMRRTLRPLVK---------------EPMRIAFRNGTLEWN----------DK----Ditwydtke----rt 461 Sulfolobus toko...
YP_914163    262 -----IPHDRAQLLTKIMPVIY-----DP--------------DAKCP------RFD--SFLEQIQP 296 Paracoccus denitrificans PD1222
YP_603404    157 -----EPFSPKFIITSKIQTSY-----TS--------------KARKP------ILG--GWFDFDKW 191 Streptococcus pyogenes MGAS1...
YP_330673    138 -----LPFSPKYVITSKISTAY-----HA--------------PKRVPtdregkTFD--DWLNSIAC 178 Streptococcus agalactiae A909
ZP_04021443  155 -----LAYSPKCVFTSKIAVNY-----NP--------------NAQEP------RFD--N-WSFSKW 188 Lactobacillus acidophilus AT...
YP_254008    118 -----KSFSPQYYITNIIDVDF-----DK--------------DAQSD------LIE--KFIKDISN 152 Staphylococcus haemolyticus ...
YP_141183    159 -----LPFNPKYVITSKIATAY-----KP--------------PKSIPkdregnTFD--DWLNSIAC 199 Streptococcus thermophilus C...
YP_001038148 312 -----TEHSPDFIITNRIPWDY-----NP--------------NAYFE------LAD--KTLDKISC 346 Clostridium thermocellum ATC...
NP_691091    241 -----MPFNPKYVYLTKIPVEYkahpiNP--------------VKTSPdg---yQWDveSWLREIMd 285 Oceanobacillus iheyensis HTE831
NP_341700    116 pehfaFHYIPHKIHLEELVKIN-----EEvlsardipidliedLARRL------CPK--SLEVFKQW 169 Sulfolobus solfataricus P2
NP_376178    462 srvyaFHYIPWSVKIDEIIKFE-----RKeikvq-----dienLARGV------CPK--SLETFKSW 510 Sulfolobus tokodaii str. 7
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