1PYS,3PCO,3L4G


Conserved Protein Domain Family
B3_4

?
smart00873: B3_4 
Click on image for an interactive view with Cn3D
B3/4 domain
This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
Statistics
?
PSSM-Id: 214876
Aligned: 345 rows
Threshold Bit Score: 41.0906
Created: 13-Jul-2011
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
1PYS_B       210 APH----FTLGYAFGL-RVaPSPLWMQRALFAAGMRP-INNVVDVTNYVMLERAQPMHAFDL-RFVGEgIAVRRAREGER 282 Thermus thermop...
YP_193174     60 eiipyreAFRKIGINPnRYpCSAEALFKRLSKGKNLPhINPLVNLNNAISLKYTVLMGTHSLdGVQ-DdIIMRLTKSGDN 138 Lactobacillus a...
YP_768974     61 wRR----GFSRMGLKPtQYrCASEALLRRFRQEHALPrLHPLIDLCNAISLAFAIPIAVFDTeKIAGd-LEVRRAKGDET 135 Rhizobium legum...
YP_001344597  64 YRN----AFQALDINPnKFqCSAEALFTRIAKGKGLPhINPLVDLNNAVSLTYTLPMGTHDL-GISPQdIEMRPAKDSDR 138 Actinobacillus ...
ZP_02617532   59 emvyyreAFLKLGINPnKFkSSIEAITTRVAKKKGFPnINPVVDIGNAVSLKYLVPLGAHDIdS-AEEdICLRFSKEGDT 137 Clostridium bot...
NP_899926     51 RWK----TIYRALPGDkKArCSLEYLVKAAQNGKLRS-ILPLVDLYNQASLISLAPFGGEDVdKL-GGeLTLDLARGDER 124 Chromobacterium...
YP_001035916  59 vvQgyieILQRVGRSVkKNpPTVPALIRNIQHRGSLPhINSIIDIYNVEALHSLLAIGGHDFdki-egqIEFTVSQKEDv 137 Streptococcus s...
YP_437510     59 higgyrrLKASMARSWkRFpVSVENLIGTLRRNGDIPlISPVVDIYNLMSLERRISIGAHDIdrl-egdVRLDITRGVER 137 Hahella chejuen...
YP_001089871  61 epVs---SYIKYYKKFkKTyPVLLQLESILLKSKGIPdVGVTIESMFLAELKNLLLTAGHDLdkm-elpLKIELANGSEH 136 Clostridium dif...
ADP87088      56 slthpvsCYTRYYRRYgKSyPVQLQMESVVLKARDIKaACLAVETMFLAEVRHGLLVAGHDTatl-rgdFVLDAAAGGET 134 Desulfovibrio v...
1PYS_B       283 -L-KTLDGVERTLHPEDLVIAGwrgeESFPLGLAGVMGGAESEVREDTEAIALEVACFDPVSIRKTARRHGLRTE-ASHR 359 Thermus thermop...
YP_193174    139 -F-VPLGKDEVEEP------------DEGEVVYA-----VGSDVC-----IRRWTWRQSEHS-KITDQTHDVFFP-IDGF 192 Lactobacillus a...
YP_768974    136 -Y-LTFGGESEHPEANEVIFAD----SE-----------------------------DRAHARRWTNRQSGLSAVrATTR 180 Rhizobium legum...
YP_001344597 139 -F-I-----PFGATESENV-------PTGEVVYA----------VDNQVRTRRWTWRQSEVGKIG-ADTHYVFFP-IDGF 192 Actinobacillus ...
ZP_02617532  138 -F-LPFGENELELLGEDELI---------------------YSVGNKVKT-RRWIWRQSEQ-GKITEESKNIFFP-IDGF 191 Clostridium bot...
NP_899926    125 -FlPLGRAEAERPQPGEAVWLN----GEREVV-------------CRSLN-WLESERF-----KLTAGCRNAVFV-SE-R 178 Chromobacterium...
YP_001035916 138 fL-PILSKEKHVAKT--------------DYVYRDAKG------------ILAWLDVRDSEYYKFDEETKDAIFI-IQGN 189 Streptococcus s...
YP_437510    138 -F-APLGAEELARAP------------AGEFAYLDDADR-----------VLCRMDCRQSRETCLQPSSRRILLI-VQGH 191 Hahella chejuen...
YP_001089871 137 f-yGIGGKEHILTKDD---------------LFLSDNIG----------ILSSILNGPDNRT-AITKDTKNIMYF-VYGP 188 Clostridium dif...
ADP87088     135 f-tTVSGQSRTLKADD---------------LYLADGDV----------ILSSVLEGQAQAS-SLTADSTDVLYC-VYGV 186 Desulfovibrio v...
1PYS_B       360 FERGVDPLGQVPAQRRALSLLQALAG 385 Thermus thermophilus
YP_193174    193 --VDVNRDAVDKAREDLVGKSKEIFG 216 Lactobacillus acidophilus NCFM
YP_768974    181 SVLIVAEALHVSAGDDIARLVETAAD 206 Rhizobium leguminosarum bv. viciae 3841
YP_001344597 193 --IGVNDDSVRQAASALAEMLEKLGA 216 Actinobacillus succinogenes 130Z
ZP_02617532  192 KDKNYD--NVINARDELAEILKKNFn 215 Clostridium botulinum Bf
NP_899926    179 PDAG--FPSGEAGMDWLQEKLAPHAG 202 Chromobacterium violaceum ATCC 12472
YP_001035916 190 ANT--SVEMRLEALERIRHDLAECMP 213 Streptococcus sanguinis SK36
YP_437510    192 AD--MAAESVRAAANSCIDLILTYCG 215 Hahella chejuensis KCTC 2396
YP_001089871 189 DK--ISEKQIQDHLNDIKHYISSAFP 212 Clostridium difficile 630
ADP87088     187 EG--VTRTDMEAFFDDLRRYILTAYP 210 Desulfovibrio vulgaris RCH1
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap