Conserved Protein Domain Family
PGA_cap

?
smart00854: PGA_cap 
Bacterial capsule synthesis protein PGA_cap
This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Statistics
?
PSSM-Id: 214858
Aligned: 124 rows
Threshold Bit Score: 135.414
Created: 13-Jul-2011
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
YP_001261584  39 TVAFGGDMIGPVHP----MN----R----AGDPA-FAGVAELFRKADVGFVNQENAVFDLNRFSGYPAaengGGYPLRYA 105 Sphingomonas wi...
NP_391469     60 saSFVGDIMMGRYV----EK----VteqkGADSI-FQYVEPIFRASDYVAGNFENPVTYQKNYKQADK----EIHLQTNK 126 Bacillus subtil...
YP_080918     61 TATFVGDIMMGRNV----EKvtnlH----GSESV-FKNVKPYFNVSDFITGNFENPVTNAKDYQEAEK----NIHLQTNQ 127 Bacillus lichen...
YP_001488470  60 TASFVGDIMFGRNVekvtDR----Y----GKQHL-FRYAKPYFDVSDYVTGNFEHPVASDQEQAA-QK----NIHLKTDE 125 Bacillus pumilu...
YP_378984      4 KLLACGDVV----N----FS----A----KQDFV-DNKLTQIIQNSDIAICNFEAPIFHQDMRPIKKA----GPHVYQSK 62  Chlorobium chlo...
ZP_02620007    6 KFMAFGDCLLENKF----IN----S----LN----FKDICKILNTNDFITFNLETTVSGLEGK-KKDK----AFNFKTGY 64  Clostridium bot...
NP_810259      2 KFAYTGDCVLQDIQ----NI----A----RTSFVnFGN--ELSNNNCRLIINLESPFIKGDESPIKNK-----ITLSALP 62  Bacteroides the...
YP_252448     63 rsTYLGNITLNKHF----RQ----M----DLNDV-FKGLKQPLQQSDFSTASL------LVSHFSNDP----KTNIKKNI 119 Staphylococcus ...
NP_765646     62 RITYLGNVTLNKHI----RQ----T----NLNDV-FKGIQDTLDHSDFSTGSL------IVNDFSRNQ----KDNINKNI 118 Staphylococcus ...
YP_300440     62 SMTYLGNIELNNHI----RK----N----NLNDA-FASIKEILKGSDYSTASLEMT------KFSDDR----KTNISKNL 118 Staphylococcus ...
YP_001261584 106 GHAAELKDMGAT---LVSLANNHPTDWGSEGLAATLRNLAAAGVVAGGAAMSDAAA-RG-PV-FQLTPKGAVALVATAST 179 Sphingomonas wi...
NP_391469    127 ESVKVLKDMNFT---VLNSANNHAMDYGVQGMKDTLGEFAKQNLDIVGAGYSLSDA-KKkIS-YQKVNGVTIATLGFTDV 201 Bacillus subtil...
YP_080918    128 ESVETLKKLNFS---VLNFANNHAMDYGEDGLKDTLNKFSNENLELVGAGNNLEDA-KQ-HVsYQNVNGVKIATLGFTDV 202 Bacillus lichen...
YP_001488470 126 DSVKALKDLKFS---ALNFANNHAADYGEKGLNKTIDAFEQADMDYTGAGRNLQDAkQN-IS-YKEVNGVKIATLGFTDV 200 Bacillus pumilu...
YP_378984     63 ESVQYLKNVGFN---FVSLANNHIYDYRQKGIFDTIQELKKFDLEFIGGGTTFEEA-YK-TT-IIEKNGITIGLLAGCEN 136 Chlorobium chlo...
ZP_02620007   65 DNLYAFKNS-INcpiICNIANNHIFDYGEECFIDTIGNLNKSNIYYTGYSSNLDIE-QG-VI-CVNINNTKIAFIGAYNG 140 Clostridium bot...
NP_810259     63 DSICFLDYLMPY---LINLANNHINDYGNESVLFTQELLDKHHFHYWGVGYKNELD-NN-VW-VDSVN--KIINIAYVTR 134 Bacteroides the...
YP_252448    120 ENIMFLKKENVK---SVNLINNTIDNVQAQDLSKQVEAQTDYNFMTGNGSNPIN---SK-TV-QQTVKGKKIANVSFTDV 191 Staphylococcus ...
NP_765646    119 ENIMFLRKHNVK---SVNLINESMDNIQATAMMRKIDSQAGYNFLTGNGSNPIN---SK-TV-QQDIKGKKIANVSFTDI 190 Staphylococcus ...
YP_300440    119 ENVLFLKGLNLK---SLNVINQVTDNITARDFMKSVEAQTGYNYLTGNGSNPIN---SK-TV-QQTIKGKKIANVSFTDV 190 Staphylococcus ...
YP_001261584 180 FpptavagpaierhammsqpRPGISPLHVRKVRVVPPPLYkvvleaagptalrdgpdmrvgdqvfrqgdslgslwemkps 259 Sphingomonas wi...
NP_391469    202 S-------------------GKGFAAKKNTPGVLP--------------------------------------------- 217 Bacillus subtil...
YP_080918    203 Y-------------------TKNFTAKKNRGGVLPLSPKI---------------------------------------- 223 Bacillus lichen...
YP_001488470 201 Y-------------------GKNFKATNRKAGILPADPSI---------------------------------------- 221 Bacillus pumilu...
YP_378984    137 E-------------------FGCLYEEQNRGGYAWLFH------------------------------------------ 155 Chlorobium chlo...
ZP_02620007  141 D-------------------NVS---------VNNIGLTS---------------------------------------- 152 Clostridium bot...
NP_810259    135 T-------------------SD-FTGSRLFADIDLKGGFS---------------------------------------- 154 Bacteroides the...
YP_252448    192 G-------------------SNYEDPLKNTTSISLDPKIF---------------------------------------- 212 Staphylococcus ...
NP_765646    191 E-------------------SNYTNSLKNTTSISLDPDIF---------------------------------------- 211 Staphylococcus ...
YP_300440    191 E-------------------SN-----YTDTLKNTTSVSL---------------------------------------- 206 Staphylococcus ...
YP_001261584 260 dRDALLD-AVA---EARKRA-GL-VLFSIHAHETAgedeepavpyhpvflqhaneAASPNDprpasFQVELFHAAIDHGA 333 Sphingomonas wi...
NP_391469    218 --ADPEI-FIPmisEAKKHA-DI-VVVQSHWGQEY--------------------DNDPND-----RQRQLARAMSDAGA 267 Bacillus subtil...
YP_080918    224 -FIPM----IA---EASKKA-DL-VLVHVHWGQEY--------------------DNEPND-----RQKDLAKAIADAGA 268 Bacillus lichen...
YP_001488470 222 -FIPM----IS---QAAEKA-DV-VVVHAHWGQEY--------------------NNEVND-----RQRELARAMSKAGA 266 Bacillus pumilu...
YP_378984    156 --HKIED-NIR---ELKAKC-DF-IVFISHAGVED--------------------IELPIK-----EWRDRYQRLCDVGV 202 Chlorobium chlo...
ZP_02620007  153 -IKNIHD-KVI---YAKKIA-DL-VILHLHWGEEL--------------------SLCQSP-----RQVNIAHKLVDLGA 200 Clostridium bot...
NP_810259    155 -PN--LN-QVE---QIRKKYwDFsIIVNIHWGKED--------------------ISYPEP-----DKRELAHKLIDAGV 202 Bacteroides the...
YP_252448    213 -VPLIKN--------LKENN-DL-VVVNVDWGITN--------------------ERSVTD-----RQKEYAHALVKSGA 256 Staphylococcus ...
NP_765646    212 -YPL-----IK---KLKENN-DY-VVVNVDWGIPN--------------------ERNVTT-----RQKEYAHALANAGA 255 Staphylococcus ...
YP_300440    207 -EPSIYMpLIK---KLKENN-DY-VVVNVDWGITD--------------------ERSVTT-----RQREYAHSLSEAGA 255 Staphylococcus ...
YP_001261584 334 SAVARHGPHIISGIEIYKGKPIFYGLGSLFLDF 366 Sphingomonas wittichii RW1
NP_391469    268 DIIVGHHPHVLEPIEVYNGTVIFYSLGNFVFDQ 300 Bacillus subtilis subsp. subtilis str. 168
YP_080918    269 DVIIGAHPHVLEPIEVYNGTVIFYSLGNFVFDQ 301 Bacillus licheniformis ATCC 14580
YP_001488470 267 DIIIGAHPHVLEPMEVYNGTAIFYSLGNFIFDQ 299 Bacillus pumilus SAFR-032
YP_378984    203 DVIIGHHPHVPQGYEKHNKSLIFYSLGNFYFDT 235 Chlorobium chlorochromatii CaD3
ZP_02620007  201 DIIIGHHPHVIQAIEEYKDSLIIYSLGNFqivt 233 Clostridium botulinum C str. Eklund
NP_810259    203 DLIIGHHPHIIQHCEYYKEKMIYYSIGNFYFpt 235 Bacteroides thetaiotaomicron VPI-5482
YP_252448    257 DVIIGHNS-VVQKVEKYKNASIFYSLGILTSDS 288 Staphylococcus haemolyticus JCSC1435
NP_765646    256 DVIIGHNT-VIQKVENYKRTPIFYSLGNTTSDn 287 Staphylococcus epidermidis ATCC 12228
YP_300440    256 DVIIGHNS-VVQEIEKYKNTDIFYSLGNttsed 287 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap