3AL0,3H0L,2D6F,2HZ7,2DF4


Conserved Protein Domain Family
GatB_Yqey

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smart00845: GatB_Yqey 
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GatB domain
This domain is found in GatB and proteins related to bacterial Yqey. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB which transamidates Glu-tRNA to Gln-tRNA. The function of this domain is uncertain. It does however suggest that Yqey and its relatives have a role in tRNA metabolism.
Statistics
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PSSM-Id: 197913
Aligned: 309 rows
Threshold Bit Score: 45.1877
Created: 13-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3AL0_B       333 FFEECVKVVn-RPKDLSNWIMTEVlReLNERNIEit-----------------eSK--LTPQHFADLFKLMDEGKISIKI 392 Thermotoga mari...
YP_001190125 328 LFEATAKNYn-NYEKLSNLIINDYlRwINDKNMKit-----------------dSK--ATPQHLSQLLELMDKGTITIKI 387 Metallosphaera ...
NP_341785    310 LFEEITNNYk-NYAKVANLLINDYmRwLNENNITvt-----------------qSK--AKANHIIELFEYLDSGLISIKI 369 Sulfolobus solf...
NP_070941    345 YFEEVAKLv--DPKLAASWIVDVLrGeLNYRDWSfa-----------------kCWevFKPEEFAKLLKYFEEDRITEKG 405 Archaeoglobus f...
YP_255373    325 LFEETAKNYk-NYKKLVNILINDYlRwLNDKNLKps-----------------qSK--ATTKHLIELLTLLDNGTITIKI 384 Sulfolobus acid...
YP_001434604 329 LFEEAAKLYt-NYKRLASLLVVDYlRwVEELGLPlg-----------------kC---VKPEWLAELLSYVDRGKITLEQ 387 Ignicoccus hosp...
YP_842615    325 FYEWVAARS--DPRLAAVWIADVLkGeLNYRNLTid---------------------sFKRESMLEIVRMLSDREITDEV 381 Methanosaeta th...
YP_001013029 330 FFEDAARLYrgNYERMANYLVNDLlNwLKDEDLRgl-----------------yTK--VKPEHLAKLMQLLDRGVISIRQ 390 Hyperthermus bu...
NP_633252    329 FYEGVCAKGv-DPKVAATWTADVLlGeLNYRDLAissydgrtigfihakdpeveNS--FKVSDMVELVTLFAEGKVSDRA 405 Methanosarcina ...
YP_566304    329 FYE-VVAAAv-EPRVAGTWVADVLkGeLNYRDLSvd---------------------sFTTDDIIQIIKLVVEDKVTEQS 385 Methanococcoide...
3AL0_B       393 AKE-IFPEVFET--GKMPSQIVEekgLTQINDEKLIEELVKKAMEQNPKAVQDYKSgkkkAAGFFVGYVMRETKGKANPE 469 Thermotoga mari...
YP_001190125 388 VKE-ILPIIITE--GKMPSDIVTamgLTTVSDEKLIEGIVDEALRNEPELLQKVKKdp-kVANYLVGIVMKKTGKRADPK 463 Metallosphaera ...
NP_341785    370 VKE-LLPEMILT--GKTPGQLIKekgMTNIKDENYLERIIDEVLNEEKEAVEKAKrd-pkVVNYLVGMVMKKTGKRADPQ 445 Sulfolobus solf...
NP_070941    406 VVE-VIRTKLDE--GGEIDAIIQkkgLFAIPKE-EIIKFCKEAIEENPKAVEDYLSgkrqALNFLVGQVMKKTRGRADPA 481 Archaeoglobus f...
YP_255373    385 AKE-ILPQIVIE--GKMPSEIIKqnsLIAIKDEDYLINVIKEVLSEEKDAVEKAKrd-pkVINYLVGKVMKKTSKRADPY 460 Sulfolobus acid...
YP_001434604 388 AREtVLPSMLRE--CKEPSRVIEekgLGVVRDVDKILSIVRKVLRENPKAVEDAKKnp-kAINFLVGQVMKALRGKADPR 464 Ignicoccus hosp...
YP_842615    382 AVT-VIRTILDR--GGSPRELVEsmgLKR-ADDDYVVQAVREAIADSQEAVRDYLSgntrAINYIVGQVMKRTKGRADPS 457 Methanosaeta th...
YP_001013029 391 AKE-MAEHIAKQ--GADPEKLVEklgFRRIADVEVLRSVVEEVFKEYPKAVRDALKnp-kAINFLVGMVMRKTRGRADPA 466 Hyperthermus bu...
NP_633252    406 AVE-VIRTILDGneEKSPSQIIEekgLFKAEDD-LVTRAVAETIAENEAAVQDYLGgtekSLNFLVGQVMKKTKGTADAK 483 Methanosarcina ...
YP_566304    386 AVD-VIRTILDD--GGTPMEVVTekgLLKVKGD-VVTEAVSETIAENEAAVQDYLGgaekSLNFLVGQVMKKTKGRADAR 461 Methanococcoide...
3AL0_B       470 LTNRIIQKLL 479 Thermotoga maritima MSB8
YP_001190125 464 LVNDIIKRKL 473 Metallosphaera sedula DSM 5348
NP_341785    446 MTVEIIKKKL 455 Sulfolobus solfataricus P2
NP_070941    482 DTAKLIEEML 491 Archaeoglobus fulgidus DSM 4304
YP_255373    461 IVNELIKKEL 470 Sulfolobus acidocaldarius DSM 639
YP_001434604 465 TVRQMIESEL 474 Ignicoccus hospitalis KIN4/I
YP_842615    458 VAHRLVREEI 467 Methanosaeta thermophila PT
YP_001013029 467 LARRLVEEKL 476 Hyperthermus butylicus DSM 5456
NP_633252    484 TARELIVKEL 493 Methanosarcina mazei Go1
YP_566304    462 QARELLVAAL 471 Methanococcoides burtonii DSM 6242
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