Conserved Protein Domain Family
DPBB_1

?
smart00837: DPBB_1 
Rare lipoprotein A (RlpA)-like double-psi beta-barrel
Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Statistics
?
PSSM-Id: 129070
View PSSM: smart00837
Aligned: 12 rows
Threshold Bit Score: 144.894
Threshold Setting Gi: 30693373
Created: 13-Jul-2011
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
AAM12783      65 TAALSTALFNDGASCGQCYKIMCdyNQDSKWCIKG-T-SITITATNFCPPNYALPSNNGGWCNPPRPHFDMAQPAWEHIG 142 Capsicum annuum
NP_001042587  60 TAALSTALFNGGASCGACFTIACd-TRKTQWCKPG-T-SITVTATNFCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIA 136 Japanese rice
ABD65309      33 TAALSTALFNNGLSCGSCYEMRC--NDDPRWCLPG-T--ITVTATNFCPPNFALSNDNGGWCNPPLQHFDLAEPAFLQIA 107 papaya
Q9FL76       125 TAALSTALFNNGSRCGACYEIMC--EHAPQWCLP--G-SIKITATNFCPPDFTKPNDN--WCNPPQKHFDLSQPMFLKIA 197 thale cress
NP_001042588  62 TTALSSALYGDGASCGACYLVTCd-ASATRWCKNG-T-SVTVTATNYCPPNYSESGDAGGWCNPPRRHFDMSQPAWEAIA 138 Japanese rice
AAW29468      69 TAALSTALFNNGQTCGACFELMC--V-SSKWCKPNaG-SIKITATNFCPPNYQEPVQY-HWCNPPNKHFDLSMKMFTTVA 143 thale cress
AAR27066      33 TTALSTALFDQGLACGACFELMC--VDDPQWCIPKaG-TITVTATNFCPPN--LPETGGNWCNPPQQHFDLSMPMFTNLA 107 common fig
EAZ08022      77 TVAVSTPLFGAGAGCGACYEVKC--VDSPDGCKVG-AaPLVVTATNLCPPNPGQSNDNGGWCNPPREHFDLSMPAFLQIA 153 Indian rice
CAC06432      62 TAALSPALFNDGAACGECCQVTCd-QSSSSSCKQG-V-IVTVTATNLCPADYSKPNNNGGWCNPPRKHMDMAQPAWEKIG 138 meadow ryegrass
AAD13635      19 TTALSTALFNKGSTCGACYQIKC--VNAPKACHPD-Q-VIIVTATNLCPPNSKKTND--DWCNPPQKHFDLTMPMFIKIA 92  tomato
XP_001782240  86 TTALSSALFKNGMACGACFEVQC--GGKGKPCKP--G-SVVVTATNFCPPNPGQSANNGGWCNPPNEHFDLSYPAFVKIA 160 Physcomitrella ...
NP_198742     81 TAALSTALFNSGASCGACYEIMC--SPNPQGCLS--G-SIKITATDLCPPGSA-------WCYLPNKHFDLSLPMFIKIA 148 thale cress
AAM12783     143 IYRGGIVPVLY 153 Capsicum annuum
NP_001042587 137 VYRAGIVPVNY 147 Japanese rice
ABD65309     108 QYRAGIVPVAF 118 papaya
Q9FL76       198 KYKAGVVPVKF 208 thale cress
NP_001042588 139 VYSSGIVPVRY 149 Japanese rice
AAW29468     144 EYRAGIVPVKF 154 thale cress
AAR27066     108 NYKAGIIPVQY 118 common fig
EAZ08022     154 QEKAGIVPISY 164 Indian rice
CAC06432     139 VYRAGIIPMKY 149 meadow ryegrass
AAD13635      93 EQTAGVVPVVY 103 tomato
XP_001782240 161 DPKAGAVPLQY 171 Physcomitrella patens subsp. patens
NP_198742    149 QVKAKMVPVRY 159 thale cress
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap