Conserved Protein Domain Family
CobW_C

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smart00833: CobW_C 
Cobalamin synthesis protein cobW C-terminal domain
CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression.
Statistics
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PSSM-Id: 214844
Aligned: 139 rows
Threshold Bit Score: 41.4286
Created: 13-Jul-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_388012    332 VRSCIYTRHRPFHPRRLWALLYdkfilqlenpedddddeeeeddedddlemvdyadaqdpssevdqetedssssrgkrsa 411 Gibberella zeae...
YP_751474    277 SSGWVFSAEHCFHFEQFMAWVD---------------------------------------------------------- 298 Shewanella frig...
NP_800099    241 SCGWLFGAEYKFDFDKLFSMLS---------------------------------------------------------- 262 Vibrio parahaem...
NP_717119    276 SCGWVFNPLQEFDFDKLMQFIS---------------------------------------------------------- 297 Shewanella onei...
YP_390726    255 SIGWVFNDDVCFEWSKLLALFE---------------------------------------------------------- 276 Thiomicrospira ...
YP_741073    242 SVGWVFAAATVFDRQRLLRTLN---------------------------------------------------------- 263 Alkalilimnicola...
YP_001003381 244 ACGWIFHSEDVFDRHALLQVLE---------------------------------------------------------- 265 Halorhodospira ...
NP_870859    253 ACGWIFSVDEVFDRDQLLDLLG---------------------------------------------------------- 274 Rhodopirellula ...
EGK36223      48 ACGWIFDADTVFDTIGILEWAR---------------------------------------------------------- 69  Shigella flexne...
ZP_04936404   19 AIGWRLAPSVRFDRVAVDAWLN---------------------------------------------------------- 40  Pseudomonas aer...
XP_388012    412 psspQS-ShstiesapspepaskkqrvaeaemdetedyftppneviletkrnhpifARLFRSKGEFLLATRPhRAGDWSQ 490 Gibberella zeae...
YP_751474    299 ----TVkM------------------------------------------------ENVLRLKAIVITYDG---VLSVNM 323 Shewanella frig...
NP_800099    263 ----DL-T--------------------------------------------------AERVKAVVNTNQGC---YAFNV 284 Vibrio parahaem...
NP_717119    298 ----EQ-Tqv---------------------------------------------nPTLLRVKAVMITSDGI---AGINW 324 Shewanella onei...
YP_390726    277 ----NL-Sagtfth------------------------------------qsniiaTPIKRAKGIFRVGHTA--RMLFQL 313 Thiomicrospira ...
YP_741073    264 ----EL-R-------------------------------------------------PAQRLKGVFRTGRDW-LLVNADR 288 Alkalilimnicola...
YP_001003381 266 ----SL-R-------------------------------------------------DCQRVKGVMRTGRDW-LRVDADG 290 Halorhodospira ...
NP_870859    275 ----YL-Q-------------------------------------------------PVVRLKGVFRCQDDW---WVINR 297 Rhodopirellula ...
EGK36223      70 ----LA-P--------------------------------------------------VERVKGVLRIPEGL---VRINR 91  Shigella flexne...
ZP_04936404   41 ----RL-S-------------------------------------------------GLRRAKAVLHCADGW-YAANAAP 65  Pseudomonas aer...
XP_388012    491 AGAMLTMTGGRPWFCTLspedyttgdaevdglvkhdikkggewgDRRQELV-FIG-E--NLDHKALEKMLDECL 560 Gibberella zeae PH-1
YP_751474    324 VDDKLMLNELD---DAL---------------------------D--TRVE-IISdM--PLEHQRLQQQLLACL 362 Shewanella frigidimar...
NP_800099    285 ANRVVSVNEISLE-------------------------------GFESRLE-VID-Sq-LLPWDELEQILLQLA 324 Vibrio parahaemolytic...
NP_717119    325 SDGDMAVTELDD--------------------------------SLDSRLE-MIA-Tq-DLDWDRIEQALVECL 363 Shewanella oneidensis...
YP_390726    314 VHNTLTRELIAY--------------------------------RKDSRLElLLD-IsaDFDYEAFEKALLDCI 354 Thiomicrospira crunog...
YP_741073    289 DGVR--AEVCDW--------------------------------RRDSRLE-VIG-H---EDARALEAALLACR 323 Alkalilimnicola ehrli...
YP_001003381 291 DGVR--AEATAW--------------------------------RGESRLE-VIG-PaaDTSWAGTEQALLAAY 328 Halorhodospira haloph...
NP_870859    298 SKNETSFSTTAY--------------------------------RRDSRLE-VIT-DraTSGWDEVEQLLLKCK 337 Rhodopirellula baltic...
EGK36223      92 QGDDLHIETQNVAPP-----------------------------DSRIELI-SSS-E---ADWNALQSALLKLR 131 Shigella flexneri K-227
ZP_04936404   66 FVDNWGKSSW----------------------------------RRDNRLE-LIL-Aa-GADEEALEEAFLACR 102 Pseudomonas aeruginos...
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