1JLX,1JLX


Conserved Protein Domain Family
Agglutinin

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smart00791: Agglutinin 
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Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain.
Although its biological function is unknown, it has a high binding specificity for the methyl-glycoside of the T-antigen, found linked to serine or threonine residues of cell surface glycoproteins. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains.
Statistics
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PSSM-Id: 129027
View PSSM: smart00791
Aligned: 5 rows
Threshold Bit Score: 204.373
Threshold Setting Gi: 157878523
Created: 12-Jul-2011
Updated: 16-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1JLX_A      158 FQFPKGYVTFKGNNGKYLGVIT--INQLPCLQFGYDNLNDPKVAHQMFV--TS-NGTICIKSNYMNKF---WRLStDDWI 229
gi 37359170 159 FQFPKRYVTFKGNNGKYLGVIT--INQLPCLQFGYDNLNDPKVAHEMFV--TS-NGTICIKSTYMNKF---WRLStDDWI 230
gi 57233444 184 LVLPK-YVAFKGDNDMYLRARI--IQKRNYLEFSSSDIADSTVVNTIFP--NYaNGNVRIKSNHFNRF---WRLS-PNWI 254
gi 20067185   2 AGLPVIMCLKSNNNQEYLRYQSdnIQQYGLLQFSADKILDPLAQFEVEPskTY-DGLVHIKSRYTNKYlvrWSPN-HYWI 79
1JLX_A        1 AGLPVIMCLKSNNHQKYLRYQSdnIQQYGLLQFSADKILDPLAQFEVEPskTY-DGLVHIKSRYTNKYlvrWSPN-HYWI 78
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
1JLX_A      230 LVDGNDPRETNE--AAALFRSDVHD---FNVISLLNMQKTWFIKRFTSGKPgFINCMNAATQNVDE--TAILEIIE 298
gi 37359170 231 LVDGNDPRETNE--AAALFRSDVHD---FNVISLLNMQKTWFIKRFTSGKPgFINCMNAATQNVDE--TAILEIIG 299
gi 57233444 255 WADSADT-SSRD--RDTLFRVVMLP----DYIGLQNLGNSRYCKRLTADKK--TSCLNAAVDTITL--EARLRVEE 319
gi 20067185  80 TASANEPDENKSnwACTLFKPLYVEegnMKKVRLLHVQLGHYTENYTVGGS-FVSYLFAESSQIDTgsKDVFHVID 154
1JLX_A       79 TASANEPDENKSnwACTLFKPLYVEegnMKKVRLLHVQLGHYTQNYTVGGS-FVSYLFAESSQIDTgsKDVFHVID 153
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