Conserved Protein Domain Family
Prim_Zn_Ribbon

?
smart00778: Prim_Zn_Ribbon 
Zinc-binding domain of primase-helicase
This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Statistics
?
PSSM-Id: 129016
View PSSM: smart00778
Aligned: 26 rows
Threshold Bit Score: 46.1714
Threshold Setting Gi: 37956818
Created: 12-Jul-2011
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
YP_171514  35 TKESPCPCC---GGETRYR-FDDLDGNGTWFCSHCggrdqkgGGGTGF 78  Synechococcus elongatus PCC 6301
YP_285776  37 RRNLPCPLC---GGTDRFQ-YTDKFGEGNYHCRSC-------GPGGGF 73  Dechloromonas aromatica RCB
NP_942969  38 GRPGPCPMC---GGRDRFT-YTRKRNRGDWVCRKCndg--spAGGDGL 79  Ralstonia eutropha H16
YP_551977  29 GKNGPCPFCpdgGGKDRYR-WTQKKYGGVWVCSAC-------TEGkya 68  Polaromonas sp. JS666
NP_813761  11 IKHVPCENC---GSSDANSlFSD----GHMFCFACde----yVKGDGE 47  gh-1
NP_744419  15 VRHLPCENC---GSSDANSiYTD----NHQYCFACeh----yVHGDGE 51  Pseudomonas putida KT2440
NP_052087  10 LYHIPCENC---GSSDANSlFSD----GHTYCYACen----wTPGDEQ 46  Yersinia phage phiYeO3-12
AAP34085   12 LYHIPCDNC---GSSDGNSlFSD----GHTFCYVCek----wTAGNED 48  T7
YP_338107  13 LYHTQCPDC---GSSDANGvYSD----GHQFCFACdps-vawKKGDME 52  Enterobacteria phage K1F
NP_523315  10 LFHAPCENC---GSSDGNSvYSD----GHEWCFVCeh----rVPANEE 46  Enterobacteria phage T3
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap