2VMG,2VNG


Conserved Protein Domain Family
NPCBM

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smart00776: NPCBM 
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This novel putative carbohydrate binding module (NPCBM) domain is found at the N-terminus of glycosyl hydrolase family 98 proteins.
Statistics
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PSSM-Id: 214816
Aligned: 18 rows
Threshold Bit Score: 126.711
Created: 12-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2VMG_A        12 ETSVY-LSELEWKSA-STGYGE----IQKDASC------DGNTITLKGengekVSYDKGIGTHA--HSEIVYSLEGldYY 77   Clostridium pe...
NP_624613    535 AGESA-LSDADPLSA-TNGWGP----VERDQSVgergagDGNPITIGG-----TTFAKGLGVHA--SSSVEYYLGG--TC 599  Streptomyces c...
ZP_02641128  905 ETSVY-LSELEWESA-STGYGE----IQKDASC------DGNTITLKGengekVSYDKGIGTHA--HSEIVYSLEGldYY 970  Clostridium pe...
ZP_02635227 1082 SRKEY-MSDLTPKQS-SNGWGT----VRKDKSIsgg----vigLTRDGd---fVDYNKGLGLHS--NAEYVYDLEGk-DY 1145 Clostridium pe...
NP_812503     24 VKEIW-LDELGESSYyIQDWGL----PRINKAVt------MTPLTVKG-----IVYERGIGTHA--ISRMLFDIGK--KA 83   Bacteroides th...
NP_562197   1306 DKETQ-LSDLNWKSA-TIGSGS----VRKDRAV------SGNQIRLLNednsvQTFAKGIGTHS--YSEIVYNSEG---Y 1368 Clostridium pe...
NP_628295    543 VPAVYqWSELAYDVS-GDGTGP------EMRLAgsswvwQRSDLSVDD-----VSYAHGVTVNG--RSSVTIDLNR--EC 606  Streptomyces c...
NP_869818    502 TKSIW-LSTIRPQSS-EVGW---------LRATynsvpdKNRLLSLGG-----DYFAHGIYAHA--PAKHVYELDG--NW 561  Rhodopirellula...
NP_561245     34 SRDVY-LSDLDWLNA-THGDDTkskiVQKNHPFtpgnnnQSTKISLKMedgsiSEFEKGLGTIAgsPSTITYDISGa-GV 110  Clostridium pe...
2VNG_A         8 SRDVY-LSDLDWLNA-THGDDTkskiVQKNHPFtpgnnnQSTKISLKMedgsiSEFEKGLGTIAgsPSTITYDISGa-GV 84   Clostridium pe...
2VMG_A        78 DYFETFVGVDQ-----EMaGTV--ASISFEVYLDNEKVFDS-----GLMTGDTTQKHVKVPI-AGKNTLKLVvKDgGDSI 144  Clostridium pe...
NP_624613    600 GKVTAQVGVDD-----ES-GDK--GTVAFEVWADETRAAST-----GTLTNADPARAVSADV-SGADIVRLVvTDaGDGS 665  Streptomyces c...
ZP_02641128  971 DYFETFVGVDQ-----EMaGTV--ASISFEVYLDNEKVFDS-----GLMTGDTKQKHVKVPI-AGKNTLKLVvKDgGDSI 1037 Clostridium pe...
ZP_02635227 1146 DYFESYVGVDK-----AM-SSRpaSSVIFKVLVDGEEKFNS-----GVMRSTTPQKYVKVDV-KNAKELKLIvNDaGDGD 1213 Clostridium pe...
NP_812503     84 KTLSGLAGADD-----NT-PFA--CNLQFKILGDRKELWRS-----GIMRKGDPAKPFNIDL-SGIDKVLLLvEEcGDGM 149  Bacteroides th...
NP_562197   1369 DIFDTWVGIDR-----HV-ADKkvSSVKFKVYVDGELKAET-----DVMRIDTPKKRLVVDV-RNSKEIKLVvDVaDNGN 1436 Clostridium pe...
NP_628295    607 SSYDALAGVDD-----LT-MKL--GKVHFSVYADDVRLWNS-----GMVKGGDPAVPVHVDI-TGRETLRLVtEPhSHFD 672  Streptomyces c...
NP_869818    562 KRLRGRSGI--------Q-GNLf-GQVDFEIIGDGKSLWKA------TRVTAGQGNAFDIDV-SKVQTLTLKvTDgGNGR 624  Rhodopirellula...
NP_561245    111 TKFFSYLGIDRsanpiNE-QYA--KVDKIEVVVDGKVIYSTinqfpNGLTYETPAIKVDLNIpENAKRLQLK-SYaGEKT 186  Clostridium pe...
2VNG_A        85 TKFFSYLGIDRsanpiNE-QYA--KVDKIEVVVDGKVIYSTinqfpNGLTYETPAIKVDLNIpENAKRLQLK-SYaGEKT 160  Clostridium pe...
2VMG_A       145 GSDHGSFGDAKLT 157  Clostridium perfringens
NP_624613    666 GYDHADWADLRVT 678  Streptomyces coelicolor A3(2)
ZP_02641128 1038 GSDHGSFGDAKLT 1050 Clostridium perfringens NCTC 8239
ZP_02635227 1214 SSDHASFGDAKLA 1226 Clostridium perfringens B str. ATCC 3626
NP_812503    150 MYDRADWLNVKFT 162  Bacteroides thetaiotaomicron VPI-5482
NP_562197   1437 TWDHADWADAKFR 1449 Clostridium perfringens str. 13
NP_628295    673 SLALADWAQSRFT 685  Streptomyces coelicolor A3(2)
NP_869818    625 GGDWGIWVEPMLT 637  Rhodopirellula baltica SH 1
NP_561245    187 WGDEVVYADAKFT 199  Clostridium perfringens str. 13
2VNG_A       161 WGDEVVYADAKFT 173  Clostridium perfringens
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