1S29


Conserved Protein Domain Family
LA

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smart00715: LA 
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Domain in the RNA-binding Lupus La protein; unknown function
Statistics
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PSSM-Id: 128955
View PSSM: smart00715
Aligned: 27 rows
Threshold Bit Score: 83.4368
Threshold Setting Gi: 11245448
Created: 12-Jul-2011
Updated: 16-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1S29_A          8 SENKQKLQKQVEFYFSDVNVQRDIFLKGKXAENaEGFVSLETLLTFKRVNSVTT--DVKEVVEAIRPS-----E--KLVL 78
gi 74956147    10 DDADQKIIKQLEYYFGNINLPRDKFLQEKLKED-DGWVPITTMLNFNRLASISK--DTEKIANAVKNSg---sG--IISV 81
gi 121962894  321 DTLKEYVRKQIEYYFSEENLQKDFFLRRKMGP--EGYLPVALIASFPRVRSLTE--DYSLILEALKDS-----T--KVDM 389
gi 74735535   401 ELLKDYIKRQIEYYFSVDNLERDFFLRRKMDA--DGFLPITLIASFHRVQALTT--DISLIFAALKDS-----K--VVEI 469
gi 74826115   457 NSIKEAIKKQVEYYFSVDNLTGDFFLRRKMDP--EGYIPVTLIASFHRVLALTT--DVAVIVNAIKES-----D--KLEL 525
gi 74625266   323 CDVQAFLTSQLEYYFSIENLCKDMFLRKHMDD--EGYVPLAFLASFNRIKSFST--DLNLLHAACKAS-----D--IIDV 391
gi 12857271    11 taLEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLETMIKFNRLNRLTT--DFNVIVQALSKSk---aK--LMEV 82
gi 3287869     41 SKLEASTIRQLEYYFGDANLARDKFLQEQISKD-EGWVPVDVLLTFKRLKSLSE--DKKVIVDAIEKS-----DegLIEV 112
gi 169166778  219 aLLKECIKRQIEHYFNAENSERDYFLRGKRGEQ-D-SLPIFLIAGFQRVQALTT----NLITEALKDS-----T--EVEI 285
gi 5326       291 lMAINNIARQIEYYFSEENLTVDNYLRSKLSK--DGFAPLSLISKFYRVVNMSFggDTNLILAALREIvaneaA--TVNV 366
                          90
                  ....*....|....*
1S29_A         79 SED-----GLXVRRR 88
gi 74956147    82 SED-----NQKIRRN 91
gi 121962894  390 SPD-----GLQIRAP 399
gi 74735535   470 VDE-----KVRRREE 479
gi 74826115   526 FEGy----KVRTKTT 536
gi 74625266   392 AIDlqspmSIKVRRK 406
gi 12857271    83 SAD-----KTKIRRS 92
gi 3287869    113 SED-----REKLRRH 122
gi 169166778  286 MNE-----KMRKKNQ 295
gi 5326       367 AEG-----TLAAKEG 376
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