3GQN


Conserved Protein Domain Family
PbH1

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smart00710: PbH1 
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Parallel beta-helix repeats
The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Statistics
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PSSM-Id: 214784
Aligned: 667 rows
Threshold Bit Score: 29.0707
Created: 12-Jul-2011
Updated: 16-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3GQN_A        142 CHNVYIRDIEAVDCTLh---------GIDITC 164  Bacillus phage phi29
Q9RZ42        550 CHDITIVGNTVQHAGSr---------GMIVAG 572  Deinococcus radiodurans
O69812        296 WQQSVIAGNTIDAAAVt---------GIYVSS 318  Streptomyces coelicolor
O28859        491 SNGNIIQGFTIKNASYgecygyvkhgGIKVGY 522  Archaeoglobus fulgidus
Q9UK96        471 NSKIIMLRNDIYRCRAs---------GIFLRL 493  human
P94576        125 KHDIAISGLTIQDLSVssee--ataiGIYVSG 154  Bacillus subtilis
Q9K5A2        297 NNDGILAKNQVAAARAk---------GIDLKT 319  Erwinia chrysanthemi
P94409        357 SSDVKVDGNQIQNGLSet------rrSIGLRA 382  Bacillus subtilis
XP_002868572  364 SALPIVRGITIKNVW-----------GIKVER 384  Arabidopsis lyrata subsp. lyrata
XP_002819653  835 RSDTKVIKNRIHSFRAy---------GIAVRG 857  Sumatran orangutan
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