2PMZ,3H0G,3IYD,1L9U


Conserved Protein Domain Family
RPOLA_N

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smart00663: RPOLA_N 
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RNA polymerase I subunit A N-terminus
Statistics
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PSSM-Id: 214767
Aligned: 140 rows
Threshold Bit Score: 228.557
Created: 12-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2PMZ_A    205 EWMILTVLPVPPITIR-PSIMIES-GIRAEDDLTHKLVDIVRIN--------------------ERLKESIDA------- 255  Sulfolobus solfat...
Q89506    216 KDFCLEVFPVIPSCCR-PHEVQDG--NINDDDLTYQLMEIVKNNsmigaiklekesmekqypecLKVKEILLLsnvekqk 292  Invertebrate irid...
Q83066    153 TNLILTKFPVLPPCCR-PQTPLVD------DDLSVFLSQIVKLN--------------------NKLKLNY--------- 196  Lymphocystis dise...
O04206    155 EGYILEYLPVPPNCLSvPEASDGF-STMSVDPSRIELKDVLKKV--------------------IAIKSSRsg------- 206  thale cress
Q9YW50    209 EAFYTNNILIMVNPAR-PPNHYDN-----KDSHIMTTKLNQLVG--------------------SIIKEKE--------- 253  Melanoplus sangui...
Q9QTF4    174 LNLIMKRFMVLPSCCR-PPNKVGG--SMVHDDLTLLISYIVKRN--------------------LKLAAAT--------- 221  Red sea bream iri...
Q9J593    186 TLFYRGYFSIPPLLIR-PVISFWIdNVPKDTNELTYLLGVIVKH--------------------CNANADE--------- 235  Fowlpox virus str...
Q9EMI5    198 KAFYANNIIIPVLPSR-PPNYFDN-KESHV--MTTKLGQLVGTS--------------------QKSRDE---------- 243  Amsacta moorei en...
AAK43568  143 NLFYKNFFPVPPFIIR-PAISFWIdSIPKETNELTYLLGMIVKY--------------------CNMNADE--------- 192  LSDV
P20504    188 NLFYTDYFPIPPLIIR-PAISFWIdSIPKETNELTYLLGMIVKN--------------------CNLNADE--------- 237  Vaccinia virus Co...
2PMZ_A    256 ---------------GAPQLIIEDL------WDLLQYHVATYFDNei--pGLPPSKHRSG-------RPLRTLAQRLKGK 305  Sulfolobus solfat...
Q89506    293 keiddflkkpiknglKTKKKINKEEitpldqYLKLHDKYVKYVNNlkfriETYCNNSQGKathattgRAIKGLRERLTGK 372  Invertebrate irid...
Q83066    197 ----------------CPQVA-----------DQLRLKILCYVDNs-----KGKATHNtn------hKAMTGIKERLSKK 238  Lymphocystis dise...
O04206    207 -------------etNFESHKAEA--------SEMFRVVDTYLQVrgtakAARNIDMRYG---------VSKISDSSSSK 256  thale cress
Q9YW50    254 -------------------------------IEDIQKIYNDIDHVk------PKSPYSRG-------TLFDTLNTEVAGN 289  Melanoplus sangui...
Q9QTF4    222 ----------------SPEQRILYY-------QALKGDILCYMDNs-----KGRAVHVTSn------KSLMGIKECISKK 267  Red sea bream iri...
Q9J593    236 --------------------------------PTIQKAIIEYDNi-----KLISTNSTTN-----------NLSYITSGK 267  Fowlpox virus str...
Q9EMI5    244 --------------------------------SEVQKIYNDIDNVk------PNSPYKTS-------NMLVTLNIQVGGN 278  Amsacta moorei en...
AAK43568  193 --------------------------------QVIQKAIIEYDD------IKIISNN----------TTSINLSYITSGK 224  LSDV
P20504    238 --------------------------------QVIQKAVIEYDD------IKIISNNTSS----------INLSYITSGK 269  Vaccinia virus Co...
2PMZ_A    306 E--GRFRGNLSGKRVDFSSRTVISPDPNISIDEVGVPEIIAKTLTVPERITPWNIEKLRQFVINGpdk-------wpG-- 374  Sulfolobus solfat...
Q89506    373 E--GQIRNNLLGKRCEMSARTVIGPDPTLKIDEVIVPKEIAQSLTFPDFVNKHNIDRLTKLVNSGnairlv-kknesGqe 449  Invertebrate irid...
Q83066    239 T--GILRQNMMGKRRNQTARSVVGPDTTLKLDEVAIPYEIANNLTIPIKITPFNYKLISSYKIAAvikangakycipTd- 315  Lymphocystis dise...
O04206    257 AwtEKMRTLFIRKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFEERVSVHNRGYLQKLVDDKl-------------- 322  thale cress
Q9YW50    290 KkeGILRSYILARRSDNTGRGVAGPIIA-KIGYLGIPEIVASTLTESIYYNRFTEQKVRDLIYNSp-------------- 354  Melanoplus sangui...
Q9QTF4    268 G--GLLRQNLMGKRRNYTARSVVGPESTLALDQVGVPPQVADTLTIEEPVTKYNIEHVRRMRATGh-------------- 331  Red sea bream iri...
Q9J593    268 T--NMLRSFVVARRKDQTARSVLGPDSSLDITEVGIPDYVRNTLTEKIFINAFTIDKVKDMFQRGe-------------- 331  Fowlpox virus str...
Q9EMI5    279 KkgSIVRSNIMARRADNTARCVAGPTMD-KIGYIYIPKIVAKTLTSSIYYNRFTENMIKDMLVNDnn------------- 344  Amsacta moorei en...
AAK43568  225 N--NMIRSYIVARRKDHNARSVIGPDITLTINEVGVPFYIRNTLTEKIFVNPFTTDEVQRLFTNNe-------------- 288  LSDV
P20504    270 N--NMIRSYIVARRKDQTARSVIGPSTSITVNEVGMPAYIRNTLTEKIFVNAFTVDKVKQLLASNq-------------- 333  Vaccinia virus Co...
2PMZ_A    375 -----ANYVIRp--------dGR----RIDLRYVKdRKe--------------------LASTLAPGY------------ 405  Sulfolobus solfat...
Q89506    450 iknnlAAAINNhgt----plqHDdiikRPKITNNH-EEkhnyeekhnfdtfetivikdpKNFVLKEGDilfrnnfqqkvv 524  Invertebrate irid...
Q83066    316 ----rQKYVLIhgdsiacsknGQ----EFMVTDCN-AVvpdnfe----------pikklVPFPLPTIEig---------- 366  Lymphocystis dise...
O04206    323 ----cLSYTQG----------------STTYSLRD-GSk--------------------GHTELKPGQ------------ 349  thale cress
Q9YW50    355 ----dVKFIVLyny-----eaLKp---ATILEVRP-EAk--------------------INNLLKIKYg----------- 390  Melanoplus sangui...
Q9QTF4    332 ---------------------------LKALYDVD-Gq---------------------VRHVVRCGL------------ 350  Red sea bream iri...
Q9J593    332 -----IKYYFN----------------KQLHQLTK-IKqnk---------------fikNKIHLLPGD------------ 362  Fowlpox virus str...
Q9EMI5    345 ----kIKYILLyry-----dqLKp---TTLLKIKP-QSr--------------------LNNLLKMKYg----------- 380  Amsacta moorei en...
AAK43568  289 -----IKFYFN----------------KRLNQLTR-IKqgk---------------fikNKIHMLPGD------------ 319  LSDV
P20504    334 -----VKFYFN----------------KRLNQLTR-IRqgk---------------fikNKIHLLPGD------------ 364  Vaccinia virus Co...
2PMZ_A    406 -------------IIERHLIDGDIVLFNRQPSLHRISMMAHRVRVLKGLTFRLNLLVCPPYNADFDGDEMNLHVPQSEEA 472  Sulfolobus solfat...
Q89506    525 lpskkfikleegwIVHRYLQNGDILVLNRQPTLHKASMMALRVKIMDVKTFKFNLACTKPYNADFDGDEMNAHAPQSEES 604  Invertebrate irid...
Q83066    367 ------------dTIERFLEDGDPVILNRQPTLHRNSMLGMKIVKKLGKTIRVNLAVTHGFNMDFDGDEGNLYLPQSEEA 434  Lymphocystis dise...
O04206    350 -------------VVHRRVMDGDVVFINRPPTTHKHSLQALRVYVHEDNTVKINPLMCSPLSADFDGDCVHLFYPQSLSA 416  thale cress
Q9YW50    391 ------------dRIEIPLQNYSMILFSRQPSLHKFNIQCAFCLIHKAQTFSTPTAIANSMNLDYDGDELNIYKPKSPSS 458  Melanoplus sangui...
Q9QTF4    351 -------------TLHRSLRDGDVVVLNRQPTLHRNSMLGMRVKVLPGNTIRVNLAVTHGFNMDFDGDEGNLYLPRSLSA 417  Red sea bream iri...
Q9J593    363 -------------WVETNIQEFTNIIFGRQPSLHRYNVISSSVRKTEEDTIKIPPGIANSQNADFDGDEEWTIVEQNPKS 429  Fowlpox virus str...
Q9EMI5    381 ------------dRIEVELEDNDVILFSRQPSLHKFNIQAGICKIWDNNTIATPTPIANSMNLDYDGDEMNVYKLKSSVS 448  Amsacta moorei en...
AAK43568  320 -------------WVEVPLKENTSIIFGRQPSLHRYNVIASTVKYIEGDTIKIPPGIANSQNADFDGDEEWMILEQNPKA 386  LSDV
P20504    365 -------------WVEVAVQEYTSIIFGRQPSLHRYNVIASSIRATEGDTIKISPGIANSQNADFDGDEEWMILEQNPKA 431  Vaccinia virus Co...
2PMZ_A    473 IAEAKEIMLVHKNIITPRYGGPIIGAAQDYISGAY 507  Sulfolobus solfataricus
Q89506    605 KAELFTLSTPKQCIMSCQSGKPNLTIVQDSLTGAY 639  Invertebrate iridescent virus 6
Q83066    435 RFEVAELMNPKKLIISNKYPQAEIFPVQDAVLGAY 469  Lymphocystis disease virus 1
O04206    417 KAEVMELFSVEKQLLSSHTGQLILQMGSDSLLSLR 451  thale cress
Q9YW50    459 -IEACFLMLSSAILKNNYNFSPAFGLIQDQLIAIH 492  Melanoplus sanguinipes entomopoxvirus
Q9QTF4    418 RAEVATLMSPYTNILSDCSKGVEVLLVQDTVLALY 452  Red sea bream iridovirus
Q9J593    430 VIEQSILMYPTTLLKHDVHGMPVYGSIQDEILAAY 464  Fowlpox virus strain NVSL
Q9EMI5    449 -VESLFTMLSVNMIKNNYNFSPIFGLIQDQIISVH 482  Amsacta moorei entomopoxvirus 'L'
AAK43568  387 VIEQSILMYPTTLLKHDVNGSPVYGSIQDEIVAAY 421  LSDV
P20504    432 VIEQSILMYPTTLLKHDIHGAPVYGSIQDEIVAAY 466  Vaccinia virus Copenhagen
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