3H0G,3HOW,2PA8,3IYD,1L9U


Conserved Protein Domain Family
RPOLD

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smart00662: RPOLD 
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RNA polymerases D
DNA-directed RNA polymerase subunit D and bacterial alpha chain
Statistics
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PSSM-Id: 214766
Aligned: 56 rows
Threshold Bit Score: 166.634
Created: 12-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3H0G_C        17 VDFVLTN----TSLAVANSLRRVVLAEIPTVAIDLVEI--------NV------NTSVMPDEFLAHRLGMIPLDSsnide 78  Schizosaccharom...
ZP_03495636   21 GEFVLEPlergFGVTLGNPLRRILLSSIPGTAVTSVYI--------EDvlhefsTIPGVKEDVVEIILNLKELVV----- 87  Thermus aquatic...
AEG34077      21 GEFVLEPlergFGVTLGNPLRRILLSSIPGTAVTSVYI--------EDvlhefsTIPGVKEDVVEIILNLKELVV----- 87  Thermus thermop...
NP_295851     17 GEFVLEPlargYGVTIGNPIRRILMSSIPGTAVTSVYI--------EDvlhefsTIPGVREDVIRLILNLKELVV----- 83  Deinococcus rad...
ZP_06581682   18 SRFVIEPlepgFGYTLGNSLRRTLLSSIPGAAVTSIRI--------DGvlheftTVPGVKEDVTDLILNIKQLVV----- 84  Streptomyces gh...
NP_213043     21 GRLVVEPlergFGTTVGNSLRRVLLSSISGTAITAVKI--------YGiyhefsAIEGVQEDAIELIANLKKIKF----- 87  Aquifex aeolicu...
NP_229272     24 SRFSLSPlergYAITIGNALRRVLLSSIPSLAIVGVRFikpekyheYD------YIEGVKEDILDIILNLKKVQF----- 92  Thermotoga mari...
NP_440645     21 SKFSLEPldrgQGTTVGNALRRVLLSNLPGAAVTAIRI--------AGvnhefaTILGVREDVLEIMLNMKELVL----- 87  Synechocystis s...
NP_072840     24 GIFEVAPlesgFGITIGNAMRRVLLSCIPGASVFAIAI--------SGvkqefsNVEGVLEDVTEMVLNFKQLVV----- 90  Mycoplasma geni...
YP_002266857  24 VKISLAPfefgYAVTLAHPIRRLLLLSSVGYAPVGLKI--------EGvhhefdSLRGVTEDVSLFIMNLKNIRF----- 90  Helicobacter py...
3H0G_C        79 pPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGegtmEIYARDLVVSSNSSLghpiladPKSRGPLICKLR-KEQEISLR 157 Schizosaccharom...
ZP_03495636   88 -RFLDPKM------------ASTTLILRAEGPK----EVRAGDFTPSA--DVe------IMNPDLHIATLE-EGGKLYME 141 Thermus aquatic...
AEG34077      88 -RFLNPSLQ------------TVTLLLKAEGPK----EVKARDFLPVA--DVe------IMNPDLHIATLE-EGGRLNME 141 Thermus thermop...
NP_295851     84 -KFHAPGPK--------------TLTLRAQGEG----EVRASAFEVPTDAe--------IVNPDLVIANLA-EDGKLVME 135 Deinococcus rad...
ZP_06581682   85 -SSEHDEP--------------VVMYLRKQGPG----LVTAADIAPPA--GVe------VHNPDLVLATLN-GKGKLEME 136 Streptomyces gh...
NP_213043     88 -LMKGDSDVE-------------ILYLQKKGEG----EVKASDIKTP--PNVe------ILNPDQYIATITdPNKELNIE 141 Aquifex aeolicu...
NP_229272     93 -RINV------------TVKGTIKMEVEKKGPG----ELVAGDIKTPA--GIe------VVNPDLHIATLN-SKADLFFE 146 Thermotoga mari...
NP_440645     88 -KSYTDQPQ--------------IGRLTAIGPG----TVTAAQFEVPS--EVe------VIDPNQYIATLA-EGAKLEME 139 Synechocystis s...
NP_072840     91 -RI-SDLLFEDGEMIEPPLERWPVLKVTAEKKG----AVYAKDLECPA--GFe------VINKDLYLFSLQ-KDMKLTVS 155 Mycoplasma geni...
YP_002266857  91 -IAKALVGQDSS-----LENQSVVVDYSFKGPM----ELRARDLNSEH---Ie------IVNPEMPLATIN-EDAQLNFS 150 Helicobacter py...
3H0G_C       158 CIAKKGIAKEHAKWSPTSAVAFEYD-P----WNKLQHTDYWFENDADAEWPKSKNadweeppreGEPFnfqEEPRRFYMD 232 Schizosaccharom...
ZP_03495636  142 VRVDRGVGYVPAE---RHGIKDR-I-NaipvDAIFSPVRRVAFQVEDTRLGQRTD------------------LDKLTLR 198 Thermus aquatic...
AEG34077     142 VRVDRGVGYVPAEKH----SIKDRI-NaipvDAVFSPVRRVAFQVEDTRLGQRTD------------------LDKLTLR 198 Thermus thermop...
NP_295851    136 VRVEEGEGYVSADKH----ATKDRI-NsipvDAMFSPVRRVAYHVENTRVGQQTD------------------LDRLILR 192 Deinococcus rad...
ZP_06581682  137 LTVERGRGYVSA---VQNKQVGQEI-GripvDSIYSPVLKVTYKVEATRVEQRTD------------------FDKLIVD 194 Streptomyces gh...
NP_213043    142 IRVERGRGYVPVE----EMEAIGEV-GwilvDADFSPVKKVGFRVDNVRVGKKST------------------YERLTLE 198 Aquifex aeolicu...
NP_229272    147 VYAEVGKGFV-----PVSEREERPDvGwipiDGVFSPVIKVNFLTENVRVGKRTD------------------YDKLILE 203 Thermotoga mari...
NP_440645    140 FRVERGVGYRVIE---RGKDENSSL-DflqiDSVFMPVTKVNYTVEDIR---------------ADGM---SPKDRLILD 197 Synechocystis s...
NP_072840    156 VYVKQGRGFTSFL---ENRELINSL-GiiatDANFSPVLHCGYEVQEVKTSKQKL------------------TDHLTFK 213 Mycoplasma geni...
YP_002266857 151 LIIYKGMGYVPSE----NTRELMPE-GymplDGSFTPIKKVVYEIENVLVEGDPN------------------YEKIIFD 207 Helicobacter py...
3H0G_C       233 VESVGSIPPNEIMVQGLRILQEKLAVLV 260 Schizosaccharomyces pombe 972h-
ZP_03495636  199 IWTDGSVTPLEALNQAVAILKEHLNYFA 226 Thermus aquaticus Y51MC23
AEG34077     199 IWTDGSVTPLEALNQAVEILREHLTYFs 226 Thermus thermophilus SG0.5JP17-16
NP_295851    193 VWTDGSAGPQEALDKAVEILRDELSVFG 220 Deinococcus radiodurans R1
ZP_06581682  195 VETKQAMRPRDAMASAGKTLVELFGLAR 222 Streptomyces ghanaensis ATCC 14672
NP_213043    199 IFTNGIKTPDQCMQEAIEILKKHYELLE 226 Aquifex aeolicus VF5
NP_229272    204 IWTKKSIRPEEALRKAADILINHFKIVT 231 Thermotoga maritima MSB8
NP_440645    198 IWTNGSIQPREALSEASDIIANLFIPLK 225 Synechocystis sp. PCC 6803
NP_072840    214 IATNGAIKAVDAFAMAAKILIEHLNPIV 241 Mycoplasma genitalium G37
YP_002266857 208 IETDGQIDPYKAFLSAVKVMSKQLGVFG 235 Helicobacter pylori G27
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