2C35,3H0G,1Y14


Conserved Protein Domain Family
RPOL4c

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smart00657: RPOL4c 
Click on image for an interactive view with Cn3D
DNA-directed RNA-polymerase II subunit
Statistics
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PSSM-Id: 128904
View PSSM: smart00657
Aligned: 15 rows
Threshold Bit Score: 96.2671
Threshold Setting Gi: 61679565
Created: 12-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2C35_A     34 KEFETA--ETLLNS---EVHMLLE-HRKQQNE--SAED-----EQELSEVFMKTLNYTARFS-RFKNRETIASVRSLLLQ 99  human
Q90841     31 PLFLDDvaNILFIK---VFQLLTD-LKQQRKE--SGKSkqssgQQNLNTIMYETLKYISKTPcRYQSPETVREFLIAMKG 104 chicken
O96150     16 PDFKNC--KCLNLC---ELQLILG-DQLRLTSkrNEEA---------QALIKSSYDYANKFA-AIKNRSSIVDIRTNLER 79  Plasmodium falcipa...
O75575      1 MEVKDA--NSALLSnyeVFQLLTD-LKEQRKE--SGKNkhssgQQNLNTITYETLKYISKTPcRHQSPEIVREFLTALKS 75  human
O35427      1 MEVKDA--NAALLSnyeVFQLLTD-LKEQRKE--SGKNkhsagQQNLNAITYETLKYISKTPcRNQSPAIVQEFLTAMKS 75  house mouse
Q09593    402 MEVLKTreTMLTNQ---EVLSFLNaLKKEEDNkqQHER-----CKQLSTVIYETKKYLNTSPaVTQNEAVICELIPKLAP 473 Caenorhabditis ele...
Q9FM02     30 SVKANA--GALTNF---EVLDFLN-SRGASKD--TTRV-----IAPIARSEYKVYDYLVETAaSTQTRESINKFADKCKD 96  thale cress
Q9FGQ4     31 RMKANA--GALTNF---ELLDFLN-SRGASKD--TTRV-----IAPIARSEYKVYDYLVETAaSTQTRESVNKSADKCKD 97  thale cress
Q60482      1 MEVKDA--NSALLSnyeVFQLLTD-LKDQRRE--SGKMkhsagQQNLNTITYETLKYLSKTPcRHQSPEIVREFLTAMKS 75  Domestic guinea pig
NP_055293   1 MEVKDA--NSALLSnyeVFQLLTD-LKEQRKE--SGKNkhssgQQNLNTITYETLKYISKTPcRHQSPEIVREFLTALKS 75  human
2C35_A    100 -KKLHKFELACLANLCPETAEESKALIPSLEGR-F-EDEELQQILDDIQTKRSFQ 151 human
Q90841    105 -HKLTKAEKLQLLNHRPVTAVEIQLMVEESEER-L-TEEQIESLLQTVASILPGD 156 chicken
O96150     80 iGDLHEYEIAMLVNLLPKTILEARYLIPSLI-R-L-NDETLNSILEHLISYKMYV 131 Plasmodium falciparum 3D7
O75575     76 -HKLTKAEKLQLLNHRPVTAVEIQLMVEESEER-L-TEEQIEALLHTVTSILPAE 127 human
O35427     76 -HKLTKAEKLQLLNHRPMTAVEIQLMVEESEER-L-TEEQIEALLHTVTSILPAG 127 house mouse
Q09593    474 -FKLTGAETLQVINLRPSTTADIQLLIEETEER-FpSEEDLEKLVSTVSECLPPP 526 Caenorhabditis elegans
Q9FM02     97 -FKLAKAEILNIINLRPSSIVELLPIIENLDDReI-DTDGILELVKDLLPPLPTT 149 thale cress
Q9FGQ4     98 -FKLAKAEILNIINLWPSSIVELLPIIENLDDReI-DTDGILELVKDLLPPLPTA 150 thale cress
Q60482     76 -HKLTKAEKLQLLNHRPMTAVEIQLMVEETEERfT-EEEQIEALLHTVTHILPAE 128 Domestic guinea pig
NP_055293  76 -HKLTKAEKLQLLNHRPVTAVEIQLMVEESEER-L-TEEQIEALLHTVTSILPAE 127 human
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