3CW1,1TH7,1I5L,3CW1,3CW1,1M8V,1B34,1LJO


Conserved Protein Domain Family
Sm

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smart00651: Sm 
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snRNP Sm proteins
small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing
Statistics
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PSSM-Id: 197820
Aligned: 142 rows
Threshold Bit Score: 39.0154
Created: 12-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3CW1_A         7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKikpknskqaE----------R--------EEKRVLG 68  human
O74499        26 LDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLR---------N----------Pedg--kltGAIRKLG 84  Schizosaccharom...
Q23543        14 VDLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLR---------D----------Pqnps-vvgDETRQLG 73  Caenorhabditis ...
Q9SI54         9 LDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVR---------D----------Hddpl-kttDQTRRLG 68  thale cress
Q40942         8 PDLKLFMEEEIQIQLKNKLCLKGTLRGFDQFLNIVLEKSSYSK-------------------------------ESNYFD 56  Bigelowiella na...
Q9VJI7        22 LDLSKYLEKQIRVKFAGGREASGILKGYDALLNLVLDNTVEYLR---------D----------SdepyklteEQTRSLG 82  fruit fly
O75243        58 LVQVHRQDDPGKVPG---RPRSGILKGFDPLLNLVLDGTIEYMR---------D----------Pddqy-kltEDTRQLG 114 human
EAW69389      38 LDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMR---------Dpddq---yklT--------EDTRQLG 97  human
NP_014252     28 LDLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMS---------NpddennteliS--------KNARKLG 90  Saccharomyces c...
XP_001713565   8 VEISNFIQKKVNVILINQINLKGTLVGFDNFSNIVIKKNQVKQE------------------------------NCFINE 57  Guillardia theta
3CW1_A        69 LVLLRGENLVSMTV 82  human
O74499        85 LVVVRGTTLVLIAP 98  Schizosaccharomyces pombe 972h-
Q23543        74 LIVARGTAITVVSP 87  Caenorhabditis elegans
Q9SI54        69 LIVCRGTAVMLVSP 82  thale cress
Q40942        57 ILIVRGNSIMSVSK 70  Bigelowiella natans
Q9VJI7        83 LVVCRGTALVLICP 96  fruit fly
O75243       115 LVVCRGTSVVLICP 128 human
EAW69389      98 LVVCRGTSVVLICP 111 human
NP_014252     91 LTVIRGTILVSLSs 104 Saccharomyces cerevisiae S288c
XP_001713565  58 IVLIRGDSLVSIEI 71  Guillardia theta
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