Conserved Protein Domain Family
PSA

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smart00639: PSA 
Paramecium Surface Antigen Repeat
Statistics
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PSSM-Id: 214756
Aligned: 127 rows
Threshold Bit Score: 28.2722
Created: 12-Jul-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P90649   1295 NLKTSYCQIFSTdgs---tnFCTYDeynGttqTACVGAA---A-CDSYttlpsgdAerKTyCLSKIN-------ASGk-- 1358 Paramecium primau...
Q27183    383 TTTDDACAKYQv--------GCVTT---G---KGCVTKTn-lKsCTTY-------DgdTTsCQSRVGt-----eG----- 430  Paramecium tetrau...
Q27183    176 LNTDAKCSSWLa--------GCVTK---G---QGCVNAPr--PaCATY-------TgdDAaCQSFIGs-----dG----- 222  Paramecium tetrau...
Q27183    313 FNTDDLCKQYQs--------SCKTN---G---KACVSAL---SaCNTY-------KgtATtCAVYIGt-----dG----- 358  Paramecium tetrau...
Q27183   1601 FYTDFDCSSYLk--------SCKTN---G---SACVASt---TaCSSS-------NgsTDfCNLLLDg-----tAKD--- 1648 Paramecium tetrau...
Q27183   1826 GKNNKDCNDGMPpfkttddpFCVYD---G---TGCIDYG---KnCSTF-------NgtEEtCPTYLAk-----dG----- 1879 Paramecium tetrau...
Q27183    707 NQTDGSCGSFLd--------GCVYN---Gn--AGCVDPKagdTtCASY-------TgvAAfCESAIVgnn---------s 757  Paramecium tetrau...
P90649    707 NQTDSTCGSFLe--------GCVYN---Gn--GGCVDPKagdTtCASY-------TgvLAfCEAAIVgsn---------s 757  Paramecium primau...
Q27183   1028 GYGVGICQKVTNt-------GCIETv------AACTSYT---LdSTLSd------AnkKAaCDSLKPvndvakfGLGtat 1085 Paramecium tetrau...
CAA65436 1611 FYTDFDCQSYLk--------SCKTD---G---TKCVATt---TaCTSF-------NgsTEfCNSLLDt-----tGKD--- 1658 Paramecium primau...
P90649   1359 --KCGFT-SnaS-----KCRDFDCQ 1375 Paramecium primaurelia
Q27183    431 --KCTWK-Sg-T-----KCVARDCA 446  Paramecium tetraurelia
Q27183    223 --NCELA-TgtT-----NCKAKECA 239  Paramecium tetraurelia
Q27183    359 --YCKGT-SttTe---aACAPKVCD 377  Paramecium tetraurelia
Q27183   1649 --KCKPL-ApaTptaagACTNKKCY 1670 Paramecium tetraurelia
Q27183   1880 --PCKAT-Tvgt--ikgACAKRVCT 1899 Paramecium tetraurelia
Q27183    758 skYCFGT-Sts-----gACKQRECT 776  Paramecium tetraurelia
P90649    758 akYCFGT-Sts-----aACSVRQCT 776  Paramecium primaurelia
Q27183   1086 ytACTWS-Tg------nTCAAYTCA 1103 Paramecium tetraurelia
CAA65436 1659 --KCRPItTatTts--sACTNKTCY 1679 Paramecium primaurelia
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