Conserved Protein Domain Family
TFIIE

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smart00531: TFIIE 
Transcription initiation factor IIE
Statistics
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PSSM-Id: 128804
View PSSM: smart00531
Aligned: 10 rows
Threshold Bit Score: 152.914
Threshold Setting Gi: 118431685
Created: 12-Jul-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AAC72123   48 GIAAVVLDALARRQWVREEDLAKDLQLHAKQLRKIIRLFEEEKLIMRDHRKETAKGAKMysaavaattdgraedkvklht 127 thale cress
NP_005504  28 IEHALALDILIRNSCVKEEDMLELLKFDRKQLRSVLNNLKGDKFIKCRMRVETAADGKTt-------------------- 87  human
EEU06582   23 GSFVLVLDAILFHSVLAEDDLKQLLSINKTELGPLIARLRSDRLISIHKQREYPPNSKS--------------------- 81  Saccharomyces cere...
NP_503060  41 SEHFIIVYHIMRAQCIREENLKARIQFDQKMLRQLLASLKAEKLVKERTITQKNENNRT--------------------- 99  nematode
NP_524026  42 lEDALIIDMLVRNPCMKEDDIGELLRFEKKQLRARITTLRTDKFIQIRLKMETGPDGKAq-------------------- 101 fruit fly
Q58187     19 EKGFEVIDVLLEKGETTEEEIAKELGVKLNVVRKLLYKLYD--ARLVDYKRWKDEDTN---------------------- 74  Methanocaldococcus...
NP_069591  22 GEVGLILFSLGIEGEFTDDQLSLELGIEINEIRKALFALYE--IGLADYVRRRDDETG---------------------- 77  Archaeoglobus fulg...
NP_148319  32 AHIFHLIYEETPNGGISDDDLESLTGYKQSDIRRILRLLGD--KRIIVSRKGRHPR-KE--------------------- 87  Aeropyrum pernix K1
NP_276780  21 eeAIPVLECLMK-GKVTDEEISEKTQLKLNIVRRILYRLYD--AGVASYKRSKDPETQ---------------------- 75  Methanothermobacte...
NP_127106  18 DEAVEIVKALEKKGEATDEELAEITGIRVNTVRKILYALYDEKL--ADFKRIKDEETG---------------------- 73  Pyrococcus abyssi GE5
AAC72123  128 hsyccldYAQARFiSSFLQICDVVRFRLHRMKKRLKDELEDKNTVQEYGCPNCQ-RKYNALDALRLIS-MvDDS-FHCEN 204 thale cress
NP_005504  88 -------RHNYYF-INYRTLVNVVKYKLDHMRRRIETDERDSTNRASFKCPVCS-STFTDLEANQLFDpM-TGT-FRCTF 156 human
EEU06582   82 -------VERVYYyVKYPHAIDAIKWKVHQVVQRLKDDLDKNSEPNGYMCPICL-TKYTQLEAVQLLN-F-DRTeFLCSL 151 Saccharomyces cere...
NP_503060 100 -------VSIIFYyINYRAVLNVVRYKIDHMRQKLESREQMDTNRAHYRCGACQ-SSYDMLEINRILDaE-SGR-LICWR 169 nematode
NP_524026 102 -------KVNYYF-INYKTFVNVVKYKLDLMRKRMETEERDATSRASFKCSSCS-KTFTDLEADQLFD-MaTLE-FRCTF 170 fruit fly
Q58187     75 -------WYSYTWlPTLEKLPYVVKKKINELIKDLEKKLEFEKNNMFFFCPNCN-VRFTFEEAMDYG--------FSCPG 138 Methanocaldococcus...
NP_069591  78 -------WMEYYWrINYDKALDVLKRELEKTAKKLREKIEAETSTIYYICPNMC-VKVSYNDAMELN--------FTCPR 141 Archaeoglobus fulg...
NP_148319  88 -------ATRYFWrIDSDTINVSLLTLKKKVLEKLVVKEAHDSGNSYYTCPRCG-SKYSFDEAFTLD--------FTCPR 151 Aeropyrum pernix K1
NP_276780  76 -------WYTYTWkFEPEKVTEMIKRKHSEIVRKLREALEFEENNMFFVCVNGH-YRFTFDEATEEN--------FTCPE 139 Methanothermobacte...
NP_127106  74 -------WYYYYWhLETKRLPEIIRARKLRELERLKKMLQEETSEVYYHCGNPEhPKLTFDEAFEYG--------FTCPI 138 Pyrococcus abyssi GE5
AAC72123  205 CNGELVVECNKLTSEEVVD 223 thale cress
NP_005504 157 CHTEVEEDESAMPKKDART 175 human
EEU06582  152 CDEPLVEDDSGKKNKEKQD 170 Saccharomyces cerevisiae JAY291
NP_503060 170 CHGDVLADETVVPSRTTRT 188 nematode
NP_524026 171 CGSSVEEDSAAMPKKDSRl 189 fruit fly
Q58187    139 CGNMLQEFDNSELIKDLEE 157 Methanocaldococcus jannaschii DSM 2661
NP_069591 142 CGAMLDYLDCSKAIEKiee 160 Archaeoglobus fulgidus DSM 4304
NP_148319 152 CGEVLEEADSREGLERLRR 170 Aeropyrum pernix K1
NP_276780 140 CGSKMEFMDNSEIIQEIKD 158 Methanothermobacter thermautotrophicus str. Delta H
NP_127106 139 CGEILQEYDNSAVIEELKK 157 Pyrococcus abyssi GE5
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