Conserved Protein Domain Family
BASIC

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smart00520: BASIC 
Basic domain in HLH proteins of MYOD family
Statistics
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PSSM-Id: 128794
View PSSM: smart00520
Aligned: 13 rows
Threshold Bit Score: 120.252
Threshold Setting Gi: 3721611
Created: 12-Jul-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ABW34376       1 MELLSPplrdidltgpdgslCSFETADDFYDD-PCFDSPDLRF-FEDLDPR------LV--------HVGALLKpeehah 64  Shuttle vector ...
NP_001025534   1 MEVMDS--------------CQFSPSELFYDS-SCLSSPEGEF-PEDFEPRe-----LP--------PFGAPAP------ 45  chicken
NP_776541      1 MDMMDG--------------CQFSPSEYFYDG-SCIPSPDGEF-GDEFEPR------VA--------AFGA-HK------ 43  cattle
NP_001079199   2 MELFETs-------------PYFFSDQRFYDN-DNYFSARLPT-YEQTGFQdr--gtAG--------ICADGVL------ 50  African clawed ...
Q91154         1 MDLVDS--------------CQFSPSEFFYDS-SSMPSPDDDF-VEDFDSR------LG--------RFRV-HP------ 43  eastern newt
AAI70129       1 MEMVDS--------------CHFSPSEFFYDS-SCIPSPEEGY-TEDYEHG------MS--------IYGA-HK------ 43  African clawed ...
P16075         7 MEMTEGs------------lCSFTAADDFYDD-PCFNTSDMHF-FEDLDPR------LV--------HVGGLLKpeeh-- 56  chicken
NP_989515      1 MELFETn-------------PYFFPEQRFYDG-ENFLGSRLQG-YEAAAFPer--peVT--------LCPES-------- 47  chicken
NP_058811      1 MELYETs-------------PYFYQEPHFYDG-ENYLPVHLQG-FEPPGYEr-----TE--------L---SLS------ 43  Norway rat
P16076         1 MELLPPalrdme--etegslCAFPTPDHFYDD-PCFNSSDMSF-FEELEPR------LV--------HVTLLKR------ 56  African clawed ...
NP_001081477   2 MDLFETn-------------SYFF----YLDG-DNGAFQQLGV-ADGSPVYpgsegtLS--------PCRDQLPv----- 49  African clawed ...
NP_001118199   1 MELFETn-------------PYFFPDQRFYEGgDNFYQSRLPGgYDQGGYQe-----RGgsmmglcgGLSGGVG------ 56  rainbow trout
BAA33566       1 MDV-------------------FSTSQIFYDS-TCASSPE--A-LEFGPG------------------------------ 27  common carp
ABW34376      65 fstavHPGPGAREDEHVRAP----SG--HHQAGRCLLWACKACKRKTTNADRRKAA 114 Shuttle vector pLV.mMyoD::ERT2.eGFP
NP_001025534  46 -----TEPACPEEEEHVRAP----SG--HHQAGHCLMWACKACKRKSTTMDRRKAA 90  chicken
NP_776541     44 -----ADLQGSDEDEHVRAP----TG--HHQAGHCLMWACKACKRKSTTMDRRKAA 88  cattle
NP_001079199  51 -----LQGSG-IEDKISPHPnv-tQQ--EHCPGQCLPWACKVCKRKTVSMDRRKAA 97  African clawed frog
Q91154        44 -----DELQCSDEEEHVRAP----SG--HHQAGHCLLWACKACKRKSSTMDRRKAA 88  eastern newt
AAI70129      44 -----KDLEESDEDEHVRAP----IG--HHQAGNCLMWACKACKRKSSTTDRRKAA 88  African clawed frog
P16075        57 -phtrAPPREPTEEEHVRAP----SG--HHQAGRCLLWACKACKRKTTNADRRKAA 105 chicken
NP_989515     48 --------RGALEEKDSTLP--------EHCPGQCLPWACKICKRKTVSIDRRRAA 87  chicken
NP_058811     44 -----PEARGPLEEKGLGTP--------EHCPGQCLPWACKVCKRKSVSVDRRRAA 86  Norway rat
P16076        57 -----GPRHEEEEEEHVRAP----SG--HHQAGRCLLWACKACKRKSSGADRRRAA 101 African clawed frog
NP_001081477  50 -----DAGSDRSEEEHVLAP----PGlqPHCPGQCLIWACKTCKRKSAPTDRRKAA 96  African clawed frog
NP_001118199  57 -----VGLGGGMEDKATPSGlsphPE--PHCPGQCLPWACKLCKRKTVTMDRRKAA 105 rainbow trout
BAA33566      28 -----GELAGSEEDEHVRVP----GA--PHQPGHCLQWACKACKRKASTVDRRRAA 72  common carp
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