1QUM,2X7V


Conserved Protein Domain Family
AP2Ec

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smart00518: AP2Ec 
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AP endonuclease family 2
These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Statistics
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PSSM-Id: 214707
Aligned: 21 rows
Threshold Bit Score: 219.095
Created: 12-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1QUM_A      3 YIGAHVSAAG--G---LA--NAAIRAAEIDATAFALFTKNQRQWRAAPLTTQTIDEFKAACEKYHytsAQ---ILPHDSY 72  Escherichia coli
NP_072901   4 LLGSFISFKA--P---NYfvQSAQDAIAIDATALMVFLGPPHSAYRVPFNKMQFSLGYELLKTKN---INsngLVVHAPY 75  Mycoplasma genital...
NP_110016   4 LLGSFISFKS--P---HYlvGSVRDAVSIKAQAFMIFLGAPHTALRVDPNRMQIDEGHTLMEQHNlskSG---MVVHAPY 75  Mycoplasma pneumon...
NP_626368  14 PVGGHVPVAG--G---LHs-VGLSYARELKAEAVQVFVANPRGWATPAGNPKQDEAFREACAAGS---VP---AYVHAPY 81  Streptomyces coeli...
NP_148385   1 MGVIRFGPAG--Kp-vEF--KGDIVKVPEFLRSIGLDALEYEAVRGVRISEAKARRLGEAARENG---VI---LSMHAPY 69  Aeropyrum pernix K1
NP_276145   3 LFLIRVGPAG--Np-vGY--RGSTVNVFSKIRAMGLDAYEYQATYGLRLKKENAIRIGENSRKND---IL---VSMHGPY 71  Methanothermobacte...
NP_143734   4 IDRLRFGTAG--IpisTP--KPSTIAGIERVRELGLDAMELEFVRGINIKPELAKKIKYVAEKND---IV---LTAHAPY 73  Pyrococcus horikos...
NP_247099   4 eIMLIFGTAGvpI---SA--EDEFKAVDV-LRKLNLGAMELEFVKGVYMKEDYAKKLKEYGE--D---II---FSAHAPH 69  Methanocaldococcus...
NP_302271   2 LIGSHVSSTD--P---LA--AAEVE----GADVVQIFLGNPQSWKAPTLRSDAD-----VLKATA---LP---VYVHAPY 59  Mycobacterium lepr...
NP_042826  13 dsGCTTTCIT--NsiaNY--VAFGEQIGFPFKSAQVFIAGPRKAVINIQEDDKVELLKMIVK-HN---LW---VVAHGTY 81  ASFV
1QUM_A     73 LINLGHPVTEALEKSRDAFIDEMQRCEQLGLSLLNFHPGS-H-LmQISEEDCLARIAESINIALD--K----TQGVTAVI 144 Escherichia coli
NP_072901  76 IINCASKDPLKQQNAISVLTNEIQLCNLAGAHYLVLHPGS-A-V-AQTTNEALDNLVKVLNQVIN--K----TKTTVICL 146 Mycoplasma genital...
NP_110016  76 IINCASKDPVKQTFAIDVLTREVKLCHAVGAKLIVLHPGS-A-V-EQTQTQALDHLIKVLNTVIAn------TKEVIICL 146 Mycoplasma pneumon...
NP_626368  82 LINFGSHTGATVERSVESLRHSLRRGRAIGALGVVVHTGSaT-G-GRERPVALKQVREHMLPLLD--Elt-hDDDPYLLL 156 Streptomyces coeli...
NP_148385  70 YVNLSSPDDSVVERSIKRLYDSMIASEWMGSYAVVVHPGY-YkG-LKSREEAVKRVIEALNRLIE--Slp-sWVKTPWIA 144 Aeropyrum pernix K1
NP_276145  72 YINLSSARKETVEKSIERLFDCAVAAELMGAYRIVFHPGF-Y-G-EHGRSGALGLCIKALDELIE--RlhgaGIREFTLA 146 Methanothermobacte...
NP_143734  74 YINLNAKEKEKVEASKRRIIQSAERLYEAGGWSVVFHAGY-Y-L-KQPKESVYQKILSALKEIQK--Elm-dKGIKVWLR 147 Pyrococcus horikos...
NP_247099  70 YINLNANEEEKVENSIRRIIKTAKVLNNCG-KNLVFHPGY-Y-L-KRSKEVTYNRIKSNIQRILDklEa---LNLNVMLR 142 Methanocaldococcus...
NP_302271  60 LINVASANSRVRIPSRKILQQTCDAAADIGAAAVVVHGGYvA-D-DNDLEDGFQRWRKALDQLQT---------DVPVYL 128 Mycobacterium lepr...
NP_042826  82 LDVPWSRRSAFVTH---FIQQELLICKEVGIKGLVLHLGA-------VEPELIVEGLKKIKPV----------EGVVIYL 141 ASFV
1QUM_A    145 ENTAGQGSNLGF-KFEHLAAIIDGVEDK--SRVGVCIDTCHAFAAGYd-Lr--TPAECEKTFADFARTVGFK--YLRGMH 216 Escherichia coli
NP_072901 147 ETMAGKGNEIGR-DLTELKYVIDRIVDK--DRIGVCLDTCHFHDSGId------FSDLTGVFNTITTKLGFE--FLKVIH 215 Mycoplasma genital...
NP_110016 147 ETMAGKGNEIGR-DLDQLKYVINHIEQQ--ERIGVCLDTCHFHDSGn------DFNNTAEIMETIDTKLGFE--FLKVIH 215 Mycoplasma pneumon...
NP_626368 157 ESTAGQGASLCS-RTWDFGPYFEALDAH--PKLGVCLDTCHIFAAGHd-Lt--GPSGMHQTLDLLVDTVGEG--RLRLIH 228 Streptomyces coeli...
NP_148385 145 PETMGKQSQVGS-----LEETVEICLNT--PRCRPCVDWAHLYARAEg-KfvtSVDQVVKAIEYIESNLGRE--AVDPLH 214 Aeropyrum pernix K1
NP_276145 147 PETTGKRSQVGS-----LDEIIKLSEEF--DEVMPTIDFAHIHARGGgcIr--DASSYRGILERIESRLG-----SHHLH 212 Methanothermobacte...
NP_143734 148 PELTGKPTQFG-----DLKELVKLSQEL--ELVLPAIDFAHAHARNKgkCn--TEEEWREMLALIENELGRE--ALDNMH 216 Pyrococcus horikos...
NP_247099 143 PETTGKTTQFG-----DIDETLKLCFEL--N-ILPCIDFSHIYARSRgvIn--DYNSFYKILEKVENVLGKE--AIKDMH 210 Methanocaldococcus...
NP_302271 129 ENTAGGDHAMAR-RFDTIARLWDVIGET---GIGFCLDTCHAWAAG---------EGLIHVVDRIKAITG----RIDLVH 191 Mycobacterium lepr...
NP_042826 142 ETPHNKHHTYKYsTMEQIKELFLRIRNTrlKQIGLCIDTAHIWSSGVn-Is--SYNDAGQWLRSLENIHSVIppSHIMFH 218 ASFV
1QUM_A    217 LNDAKSTFGSRVD-R-HHSLGEGN--------IGHDAFRWIMQDDRFDGIPLILETIN-----PDIWAEEIAWLKAQ 278 Escherichia coli
NP_072901 216 LNESKNNCGSKKD-R-HANINAGM--------IGFENLMKFISHPQIKDLPIILETPStslnyPTIYREEISQIRSW 282 Mycoplasma genitalium...
NP_110016 216 LNESKNVCGSKKD-R-HANLGEGM--------IGFDNLMRFIAQPQIKQIPIVLETPSdkhnyPAVYGAEIERIRAW 282 Mycoplasma pneumoniae...
NP_626368 229 ANDSKDVAGAHKD-R-HENIGAGH--------IGEDPFRALMTHPATDGVPLVIETPGg----KEGHAADVARLKKL 291 Streptomyces coelicol...
NP_148385 215 THFSKIEYGKGGE-RmHHTLREEG--------YGPDWRIVCRAYKETGINAVVISESP-------ILEKDALLMKSI 275 Aeropyrum pernix K1
NP_276145 213 CHFTGIEYTDAGE-RkHHSLSEGY---------GPPIEPLIEVLVDGGWDATIISETP-------MKDTDARKIKGI 272 Methanothermobacter t...
NP_143734 217 IHISGIEYGEKGEkR-HLNLEE----------SDLKWEDLLKVLKEFRVKGVIISESP-------NIEGDAILMKKK 275 Pyrococcus horikoshii...
NP_247099 211 IHLSGIEYGKGGErR-HLPLNE----------SNFNYRDVLKALKDFDASGTVICESP-------MLEYDAVLLMKC 269 Methanocaldococcus ja...
NP_302271 192 CNDSKDEAGSGRD-R-HANLGSGQ--------IDAE---LLVAAVKVAGAPVICETAE------EGRKDDIAFLREK 249 Mycobacterium leprae TN
NP_042826 219 LNDAATECGSGID-R-HASLFEGMiwksyshkIKKSGLYCFVEYITRHQCPAILERNLg----SSM-QLQTALTAEF 288 ASFV
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