2POL,1VPK,2AWA


Conserved Protein Domain Family
POL3Bc

?
smart00480: POL3Bc 
Click on image for an interactive view with Cn3D
DNA polymerase III beta subunit
Statistics
?
PSSM-Id: 214686
Aligned: 27 rows
Threshold Bit Score: 297.582
Created: 13-Jul-2011
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
2POL_A        17 VSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPh-------EPGATTVPARKFFDICRGLPEgAEIA 89  Escherichia coli
NP_370526     18 tlKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKTVDgedivnisETGSVVLPGRFFVDIIKKLPG-KDVK 96  Staphylococcus ...
NP_387883     17 VLKAVSSRTTIPILTGIKIVASDDGVSFTGSDSDISIESFIPKEEGdkeivtieQPGSIVLQARFFSEIVKKLPM-ATVE 95  Bacillus subtil...
NP_240868     17 VSKAVSSRTTIPILTGIKIVADHEGVTLTGSDSDISIETFIPLEEGdrqnvevkQEGSIVLQAKVFAEIVKKLPE-QEIE 95  Bacillus halodu...
NP_357596     18 TKRAISSKNAIPILSTVKIDVTNEGVTLIGSNGQISIENFISQKNEdagl-litSLGSILLEASFFINVVSSLPD---VT 93  Streptococcus p...
YP_001031367  18 TKQAIGSKVTIPALTKLKIEVEEKGITLIGSNGQISIKNFLPADNKdasm-lisGTGSVLLEAAFFENVVSQLPE-VTLE 95  Lactococcus lac...
NP_109689     18 nnvIVSNNKMKPYHSYLLIEATEKEINFYANNEYFSAKCTLAENIDv------lEEGEVIVKGKIFSELINGIKE-DIIT 90  Mycoplasma pneu...
P34029        17 VSRIISQKTLIPSLLGILIEVKKDKITFTTSDGDTSIKSEIMGNDLni-----tRIGSVLIKNKFIVEVIRKIED-EFIT 90  Spiroplasma citri
YP_424002     17 AAKVIDYKNVNPSLSGIYLNVLNDQVNVITTSGILSFKSILNNQNSdle---vkQEGKVLLKPKYVLEMLRRLDD-EFVV 92  Mycoplasma capr...
ZP_03797273   21 AKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIVSE--------TDFKVLINASNFYDAVKAFNFyKKIK 92  Borrelia burgdo...
2POL_A        90 VQL-EG---E--R-ML-VR-SG--------RSRFSLSTLPAADFPNL--DDWQSE-----VEF--TLPQATMKRLIEATQ 143 Escherichia coli
NP_370526     97 LST-NE---Qf-Q-TL-IT-SG--------HSEFNLSGLDPDQYPLL--PQVSRD-----DAI--QLSVKVLKNVIAQTN 151 Staphylococcus ...
NP_387883     96 IEV-QN---Q--Y-LT-IIrSG--------KAEFNLNGLDADEYPHL--PQIEEH-----HAI--QIPTDLLKNLIRQTV 150 Bacillus subtil...
NP_240868     96 IHV-QD---S--F-VTtIR-SG--------SSVFNLNGLDPDEYPRL--PVLEED-----HVF--RLPQKILKDIIRQTV 150 Bacillus halodu...
NP_357596     94 LDF-KEieqN--Q-IV-LT-SG--------KSEITLKGKDSEQYPRI--QEISAS-----TPL--ILETKLLKKIINETA 150 Streptococcus p...
YP_001031367  96 FIE-KE---Q--KqVL-LT-SG--------KSEITLKGLDSEIYPHL--QEISEG-----SSL--KMKVKVLKEIFTETV 150 Lactococcus lac...
NP_109689     91 IQE-KD---Q--T-LL-VK-TK--------KTNINLNTIDKKEFPRI--RFNQNVdlkefDEL--KIQHSLLTKGLKKIA 149 Mycoplasma pneu...
P34029        91 LEVvEG---N--L-IK-IK-AN--------NFDSVLNTLNSADYPHL--SFETEG-----KEI--IFTSTVLKEIISQTS 145 Spiroplasma citri
YP_424002     93 FSM-VE---D--NeLI-IK-TN--------NSDFSIGVLNSEDYPLI--GFREKG-----IEF--NLNPKEVKKTIYQVF 147 Mycoplasma capr...
ZP_03797273   93 IVF-NE---NnsK-LE-IM-GElndekeeyEDHLKEPTFSYEEIENYnyDMVNED-----YTFgiEIKQKSFKKVINRIA 160 Borrelia burgdo...
2POL_A       144 FSMAH-QDVRYYLNGMLFET-EG-E--ELRTVATDGHRLAvcSMPIGQ-SLp---sHSVIVPRKGVIELMRMLDGgDNPL 214 Escherichia coli
NP_370526    152 FAVST-SETRPVLTGVNWLI-QE-N--ELICTATDSHRLAvrKLQLED-VSe---nKNVIIPGKALAELNKIMSDnEEDI 222 Staphylococcus ...
NP_387883    151 FAVST-SETRPILTGVNWKV-EQ-S--ELLCTATDSHRLAlrKAKLDI-PEdr--sYNVVIPGKSLTELSKILDDnQELV 222 Bacillus subtil...
NP_240868    151 FAVST-QETRPVLTGVNFEI-ED-G--ILTCTATDSHRLAmrKVPVEK-NDdelqfSNVVIPGKSLNELSKILDEnEELL 224 Bacillus halodu...
NP_357596    151 FAAST-QESRPILTGVHFVL-SQhK--ELKTVATDSHRLSqkKLTLEK-NSd---dFDVVIPSRSLREFSAVFTDdIETV 222 Streptococcus p...
YP_001031367 151 FAVST-QENRPIFTGVHLETlST-G--ELKAVATDSHRMSqrLLPLED-TDl---kFDVILPSKSINSFKNVFTNdEEEI 222 Lactococcus lac...
NP_109689    150 HAVSTfRESTRKFNGVNFNG-SN-Gk-QIFLEASDSYKLSvyEIKQKT-DP-----FNFIVETNLLSFINSFNPEgGDLI 220 Mycoplasma pneu...
P34029       146 FAIGE-KEKRIVFNGLNIKT-DQ-NnkELIITATDSFRLSckKIDYSN-NYn----FDVIIPGKFINEIGRLISEnDQVS 217 Spiroplasma citri
YP_424002    148 VSMNE-NNKKLILTGLNLKL-NN-N--QAIFSTTDSFRISqkILEIQSdNNe---dIDITIPFKTALELPKLL-DnAENL 218 Mycoplasma capr...
ZP_03797273  161 FSAHL-DESKNVLNGVYFSK-DE-Ds-KLLLVSTNGHRMSicKTEVIV-EEd----VNFIVPVKIFNFLKHLMSG-EGMV 230 Borrelia burgdo...
2POL_A       215 RVQIG-------SNNIRAHVGDFIFTSKLVDGRFPDYRRVLP--KNPDKHLEAGCDLLKQAFARAAILS-N-E-KFRGVR 282 Escherichia coli
NP_370526    223 DIFFA-------SNQVLFKVGNVNFISRLLEGHYPDTTRLFP--ENYEIKLSIDNGEFYHAIDRASLLA-R-EgGNNVIK 291 Staphylococcus ...
NP_387883    223 DIVIT-------ETQVLFKAKNVLFFSRLLDGNYPDTTSLIP--QDSKTEIIVNTKEFLQAIDRASLLA-R-EgRNNVVK 291 Bacillus subtil...
NP_240868    225 DIVVT-------ENQTLFKLKNMLFFSRLLEGKYPVTKNMIP--KEAKTSFAVHTKAFLQTLERALLLS-R-EgKNQVIN 293 Bacillus halodu...
NP_357596    223 EIFFA-------NNQILFRSENISFYTRLLEGNYPDTDRLIP--TDFNTTITFNVVNLRQSMERARLLS-SaT-QNGTVK 291 Streptococcus p...
YP_001031367 223 EIFIS-------GSQMLFQNETISYYSRLIEGSYPDTNRLIPneADYTLDLVFDAAQLRHTMDRARLLT-VmT-TNGTVK 293 Lactococcus lac...
NP_109689    221 SIFFRkehkddlSTELLIKLDNFLINYTSINESFPRVMQLFD--FEPETKVTIQKNELKDALQRILTLAqN-E-RFFLCD 296 Mycoplasma pneu...
P34029       218 ELLL----------------IIINCKQKIIEGKYPDTSKVIR--TSFNTSLTINNRAIIKIIERRSVLS-N-EtMTTIVT 277 Spiroplasma citri
YP_424002    219 KIIIV-------EGYITFIIDNVIFQSNLIDGKFPNVQIAFP--TKFETIITVKQKSILKVLSRFDLVAdD-G-LPAIVN 287 Mycoplasma capr...
ZP_03797273  231 KIKFS-------DKKFYVEFDNYKIACSLINGNYPDYKSIIP--KEQKNKSLVSLGILKDRLARVNLYV-D---KSRKLV 297 Borrelia burgdo...
2POL_A       283 L-YVSE-NQLKITANNpEQEEAEE--ILDVt-yS--GAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA-S 354 Escherichia coli
NP_370526    292 L-STGD-DVVELSSTSpEIGTVKE--EVDAndvE--GGSLKISFNSKYMMDALKAIDNDEVEVEFFGTMKPFILKPKG-D 364 Staphylococcus ...
NP_387883    292 L-SAKPaESIEISSNSpEIGKVVEa-IVADq-iE--GEELNISFSPKYMLDALKVLEGAEIRVSFTGAMRPFLIRTPN-D 365 Bacillus subtil...
NP_240868    294 LkTLGD-GVVEVTAITpEIGKVTE--NVATqglE--GEELRISFNGKNVIDALKVVDSESIHIAFTGAMSPFVLSPTD-H 367 Bacillus halodu...
NP_357596    292 L-EIKD-GVVSAHVHSpEVGKVNE--EIDTdqvT--GEDLTISFNPTYLIDSLKALNSEKVTISFISAVRPFTLVPADtD 365 Streptococcus p...
YP_001031367 294 L-TVSG-DSVVTTANSpEVGSVHE--ELTAlskE--GNDLSISFNPEYLIDALKVIKAPEVRIRFISNVRPFTLQPRN-E 366 Lactococcus lac...
NP_109689    297 M-QVTN-SHLKINSNVqNIGASLE--EVTClkfE--GHKLNIAVNALSLLEHIDSFDTDEIELYFQGSNKYFLISSNN-E 369 Mycoplasma pneu...
P34029       278 L-KIKE-QKVLVTSFTqEIGNTEE--EIRDfkvE--GTDQIIAFNSKYILDALKAFKTKEITIKMIDERKPLIITAND-D 350 Spiroplasma citri
YP_424002    288 I-KVNE-DKIEFKSFIsEVGKYEE--DFDDf-vIegNKSLSISFNTRFLIDAIKTLSEDRIELKLINSTKPIVINNVY-D 361 Mycoplasma capr...
ZP_03797273  298 L-TFSE-LQLKLLGEDlITGRKGEffIKDPn-yLydGADEVMAINISYFVEAISVFETSKIEIQFNSGN-VLKLSEPE-N 372 Borrelia burgdo...
2POL_A       355 QSa-aYVVM 362 Escherichia coli
NP_370526    365 DSv-tQLIL 372 Staphylococcus aureus subsp. aureus Mu50
NP_387883    366 ETi-vQLIL 373 Bacillus subtilis subsp. subtilis str. 168
NP_240868    368 DQs-lHLfs 375 Bacillus halodurans C-125
NP_357596    366 EDf-mQLIT 373 Streptococcus pneumoniae R6
YP_001031367 367 ESgfvQLIT 375 Lactococcus lactis subsp. cremoris MG1363
NP_109689    370 PEl-kEILV 377 Mycoplasma pneumoniae M129
P34029       351 QTl-qQLVL 358 Spiroplasma citri
YP_424002    362 EHl-kQVIL 369 Mycoplasma capricolum subsp. capricolum ATCC 27343
ZP_03797273  373 FNf-tHLIM 380 Borrelia burgdorferi Bol26
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap