1TAQ,1UT5


Conserved Protein Domain Family
53EXOc

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smart00475: 53EXOc 
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5'-3' exonuclease
Statistics
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PSSM-Id: 214682
Aligned: 33 rows
Threshold Bit Score: 204.751
Created: 13-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1TAQ_A        12 GRv--LLVDGHHLAYrtFHAL------Kg----lTTSRGEP-VQAVYGFAKSLLKALKE----DG--DAVIVVFD---AK 69   Thermus aquaticus
O68765        19 NY---LFVDGNSLGY--YHQQ------Sd-----KLHNGEMeVQAAFGFVKNVRRYASI----LH--ARPMILWDgfsDK 76   Yersinia pesti...
O96139       106 DYetfLIVDGSSILFknFFGM------Pf----lKNDNDVN-LSTIYGFIQSLNKIYNL----FLp-TYIAIIFD---SK 166  Plasmodium fal...
NP_390083      4 NKl--LLVDGMALLFraFFAT------AvhrnfmINDSGVP-TNGVNGFLKHLITAVET----FQp-THVVCCWD---MG 66   Bacillus subti...
NP_110067      2 KNa--ILIDGNSLAYraYFAT------WqqvefaKLHNLPF-NNAIRTMLMMCWNLLQS----KQy-DYGVISFD---TK 64   Mycoplasma pne...
NP_221127      3 kkntlLLIDGYGFVFraYYAQ------Ks----lSSAKGEP-VGALYGFTSMLLKLLSD----FKp-QYVAIVFD---SG 63   Rickettsia pro...
CAB44358      22 DRv--ILVDGSSFIFraYFQSinqdqkYn----tRPSDGLP-TGAVRLFCTKIAQFLQEgaagVKp-THLGIVFD---KS 90   Methylobacteri...
ZP_07189699   30 vHl--LIVDALNLIRr-----------------iHAVQGSP---CVETCQHALDQLIMH----SQp-THAVAVFD---DE 79   Escherichia co...
NP_208261      8 kegtlALIDTFAYLFrsYYMSak---nKp----lTNDKGFP-TGLLTGLVGMVKKFYKD----RKnmPFIVFALE---SQ 72   Helicobacter p...
1UT5_A        20 RNl--MIVDGTNLGFrfKH---------------NNSKKPF----ASSYVSTIQSLAKS----YSa-RTTIVLGD---KG 70   Enterobacteria...
1TAQ_A        70 ap--sfRHEAYGGYKAGRA------PTPED--FPRQL-ALIKELVD--LLGLARLEVPGYEADDVLASLAKKAEK--EGY 134  Thermus aquaticus
O68765        77 ------RRDFYPEYKANRDddpdmkKMKEG--FAIQK-PYILKMMT--ALGVNQLIAKDAEADDLAGMLVSRLAPqpTVD 145  Yersinia pesti...
O96139       167 tsn-ndKKKIYANYKIFRR------KNPDE--LYEQL-KIVSNFCD--TIGIKTISSTNIESDDYIARIVDNISN----- 229  Plasmodium fal...
NP_390083     67 sk--tyRNDLFQDYKANRS------APPVE--LIPQF-DLAKEAAA--ELGIMNIGFAGYEADDCIGTLADLFAN--E-A 130  Bacillus subti...
NP_110067     65 ap--tfRDQLYSEYKSKRS------KTPSE--LLVQI-PVVKESLR--HLGFLVCEQDGFEADDLIGSYARLMTQ--NNV 129  Mycoplasma pne...
NP_221127     64 gk--nfRHKIYQNYKANRP------LPPKD--LIAQL-PLVRDVAS--NFKFAILEKNGYEADDIIATFATKTVS--LGE 128  Rickettsia pro...
CAB44358      91 eg--sfRKELFPDYKGHRP------DAPDD--LKRQM-PLMRDAVR--AFGLHAVELVRYEADDLIATYARQAEA--RGA 155  Methylobacteri...
ZP_07189699   80 nrssgwRHQRLPDYKAGRP------PMPEE--LHDEM-PALRAAFE--QRGVPCWSTSGNEADDLAATLAVKVTQ--AGH 146  Escherichia co...
NP_208261     73 tk--tkRAEKLGEYKQNRK------DAPKE--MLLQI-PIALEWLQ--KMGFVCVEVNGFEADDVIASLATLSP-----Y 134  Helicobacter p...
1UT5_A        71 ks--vfRLEHLPEYKGNRDeky-aqRTEEEkaLDEQFfEYLKDAFElcKTTFPTFTIRGVEADDMAAYIVKLIGH--LYD 145  Enterobacteria...
1TAQ_A       135 EVRILTADKDLYQLLSDR-IHvLHP------------------------------------------------------- 158  Thermus aquaticus
O68765       146 HIYLLTGDGDWLQLVREN-VS-WVSlre---------------------------------------------------- 171  Yersinia pesti...
O96139       230 -------------TLKEKkQKdFSFvnnhqekepppmytymknnvydnagsigtnkifdkepnhingningnvndhtngn 296  Plasmodium fal...
NP_390083    131 DITVVTGDRDLLQLLTDK-VSvALLqkg---------------------------------------------------- 157  Bacillus subti...
NP_110067    130 AVDIYSSDRDLLQLVDSM-TSvWLCvkg---------------------------------------------------- 156  Mycoplasma pne...
NP_221127    129 EVIIISSDKDLLQLMSKN-IKiYDPik----------------------------------------------------- 154  Rickettsia pro...
CAB44358     156 EVIIVSSDKDLMQLVSDK-IRfYDFesg---------------------------------------------------- 182  Methylobacteri...
ZP_07189699  147 QATIVSTDKGYCQLLSPT-LRir--------------------------------------------------------- 168  Escherichia co...
NP_208261    135 KTRIYSKDKDFNQLLSDK-IAlFDg------------------------------------------------------- 158  Helicobacter p...
1UT5_A       146 HVWLISTDGDWDTLLTDK-VSrFSFttr---------------------------------------------------- 172  Enterobacteria...
1TAQ_A           --------------------------------------------------------------------------------      Thermus aquaticus
O68765           --------------------------------------------------------------------------------      Yersinia pesti...
O96139       297 vndhingnindhingnindhindhtndhtndhtndhtndhtndhtndhlndyeyyeyyntndddhynindddhyhindda 376  Plasmodium fal...
NP_390083        --------------------------------------------------------------------------------      Bacillus subti...
NP_110067        --------------------------------------------------------------------------------      Mycoplasma pne...
NP_221127        --------------------------------------------------------------------------------      Rickettsia pro...
CAB44358         --------------------------------------------------------------------------------      Methylobacteri...
ZP_07189699      --------------------------------------------------------------------------------      Escherichia co...
NP_208261        --------------------------------------------------------------------------------      Helicobacter p...
1UT5_A           --------------------------------------------------------------------------------      Enterobacteria...
1TAQ_A       159 ----------------------------------------------------------------EG------Y-LITPAW 167  Thermus aquaticus
O68765       172 --------------------------------------------------------------daKH------K-QVNFEQ 182  Yersinia pesti...
O96139       377 ynnfydniyaeenvschenvatnnidkkkkfrvivvssdkdllqlleynnetynmdisicqpnkKY------R-LVNSHL 449  Plasmodium fal...
NP_390083    158 --------------------------------------------------------------igNY------K-VYTKET 168  Bacillus subti...
NP_110067    157 --------------------------------------------------------------tkEM------K-EYNTDN 167  Mycoplasma pne...
NP_221127    155 -----------------------------------------------------------------------cK-YITEDN 162  Rickettsia pro...
CAB44358     183 --------------------------------------------------------------akGKpgyrpeR-NLDREA 199  Methylobacteri...
ZP_07189699  169 --------------------------------------------------------------dyFQ------K-RWLDAP 179  Escherichia co...
NP_208261    159 ----------------------------------------------------------------KT------E-FLAKDC 167  Helicobacter p...
1UT5_A       173 -------------------------------------------------------------reyHL------RdMYEHHN 185  Enterobacteria...
1TAQ_A       168 LWEK-Y-GL-RPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKN----------------LD----RL 224  Thermus aquaticus
O68765       183 FAEL-T-GLpTPRAFLEAKALQGDTSDNIKGVGGIGDGGAKELLHEWGSVAAMVRGindgsivinkgryktaFN----KL 256  Yersinia pesti...
O96139       450 FYEE-H-EI-LPSQYSDYLILTGDKTDGISGVPYIGDKTSKCLLKEYHNIENILKN----------------LH----KL 506  Plasmodium fal...
NP_390083    169 FYEE-T-GV-MPKALIDIKALMGDSSDNYPGVKGIGEKTAYKLIREYETIDRLLEN----------------LS----LL 225  Bacillus subti...
NP_110067    168 FAEQfF-GL-TPKQVIEYKGLVGDNSDNLTGIKGIGPKKGIDLLKQYGTIDNIFAN----------------FD----KL 225  Mycoplasma pne...
NP_221127    163 VVTK-F-GT-TPDKLREVMALIGDRSDNIPGVPSIGPKTASSLITKFGSVENIFNS----------------LD----QI 219  Rickettsia pro...
CAB44358     200 IIAK-WeGL-APEQIGDALALIGDTSDNVPGVPGIGLKTAAALIKEYGSLEQLLER----------------AS----EI 257  Methylobacteri...
ZP_07189699  180 FIDKeF-GV-QPQQLPDYWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYEN----------------LD----AV 237  Escherichia co...
NP_208261    168 V-EK-Y-GI-LPSQFTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYEN----------------LDlaknLL 227  Helicobacter p...
1UT5_A       186 VDDV--------EQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFG---NVLDI----------------ID----QL 234  Enterobacteria...
1TAQ_A       225 K-P-AIREKILA-HM-DDLKLSWDLAK-VRTDLPl---EVDFAKRREP 264  Thermus aquaticus
O68765       257 AkN-AFNEKTGC-RMlEAFKRNMMLMNlIDTKFP----PSEIESIKGA 298  Yersinia pestis KIM 10
O96139       507 P-S-KLHHIFLN-NI-ENINTFRKLIK-LKCETNeslvFDDYKQKRIK 549  Plasmodium falciparum 3D7
NP_390083    226 P-K-GQQGKIQQ-GL-SDLEMSRKLAE-IHCSVPl---ACTLKDALFT 265  Bacillus subtilis subsp. subtilis str. 168
NP_110067    226 S-K-ALQTILQG-QI-DTAKKFSFLAS-IKTDIKl---NDDIVHAALK 265  Mycoplasma pneumoniae M129
NP_221127    220 S-SiKQRKTLQN-AR-EAALISWKLIG-LDSNVDl---DFDLNNLKWS 260  Rickettsia prowazekii str. Madrid E
CAB44358     258 KqP-KRREMLLA-NI-DQAKLSRRLVA-LEESVPv---PVPLDELGVP 298  Methylobacterium extorquens DM4
ZP_07189699  238 A-E-KWRKKLET-HK-EMAFLCRDIAR-LQTDLHi---DGNLQQLRLv 277  Escherichia coli MS 196-1
NP_208261    228 S-P-KMYRALIH-DK-ASAFLSKELAT-LERGCIk---EFDFLSCAFP 267  Helicobacter pylori 26695
1UT5_A       235 PlP-GKQKYIQNlNA-SEELLFRNL---ILVDLPt---YCVDAIAAVG 274  Enterobacteria phage T5
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