2HBJ


Conserved Protein Domain Family
35EXOc

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smart00474: 35EXOc 
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3'-5' exonuclease
3\' -5' exonuclease proofreading domain present in DNA polymerase I, Werner syndrome helicase, RNase D and other enzymes
Statistics
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PSSM-Id: 214681
Aligned: 48 rows
Threshold Bit Score: 64.2996
Created: 13-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2HBJ_A         87 PIWVDTSTELE--SMLEDLK----NTKEIAVDLEHHDYRSYYGIV--CLMQIS----TRERDYLVDTL--------KLRE 146  baker's yeast
Q55971        372 PQIITTIAQLE--ALVEELKkhtdADFPVAWDTETDSLDPLVANL--VGIGCAwgqePNQVAYIPLKH--------HQGE 439  Synechocystis...
Q9ZIG3        333 YRIVRNRQQLD--ELVARLDg----LERLAIDTETTSTEAMWASL--VGIAFSw--eKGQGYYVPTPL--------PDGT 394  Rhodothermus ...
ZP_03085653   330 YVTILDEETLK--AWIAKLEk---A-PVFAFDTETDSLDNISANL--VGLSFAi--ePGVAAYIPVAH--------DYLD 391  Escherichia c...
NP_046860      15 INVVEHPEDLD--GFRDFIRa---HQNCLAVDTETTGLDIYSADFrcRLVQFG----TQTESWV-LPI--------EDLE 76   Mycobacterium...
YP_001633981  339 VTIVRDATALA--DLVSRLRn---A-PAFAFDTECTSLQPVASDL--VGISIAi--aPDTVCYIPVGHqse--tqvPCGE 406  Chloroflexus ...
AAA03732      207 sRVVIDLETVKtnPFIEKVTm---KKT----TLEAYPMSQ-QPKI--VGIGLSd--rSGYGCAIPLYHrenlmkgnQIGT 274  Bacillus phag...
YP_003068707  427 YETIATVAQLE--AWIAESY----EAGVIAVDTETDALDAAKAGL--VGVSLAt--aPGRAAYIPLAH--------VKPE 488  Methylobacter...
NP_039708      15 VNVVETPEDLE--GFRNFIRa---HLNCLAVDTETTGLDIYSDTF--ECRLVQf--gTQDEAWV-VPV--------ELGD 76   Mycobacterium...
ADD72258      425 TRLVGFSICFQ--EAEAFYVp--lIVPDVSLHTESTQCTCARSTN--VETEKEcteqHGVSASAVQDP--------AYVQ 490  Treponema pal...
2HBJ_A        147 n---------------------L--HILNEVFTNPSi-------VKVFHGAFMDIIWLQ-RdLGLYVV----G-----L- 185  baker's yeast
Q55971        440 ql-------------------sL--GIIKDLLGEILgna---iyPKVLQNAKFDRRVLAh--HGIELG----GvvldtM- 488  Synechocystis...
Q9ZIG3        395 p--------------------tE--TVLERLAPILRra-----qRKVGQNLKYDLVVLAqH-GVEVPP----P-----Y- 436  Rhodothermus ...
ZP_03085653   392 apdqi------------sreraL--ELLKPLLEDEKa-------LKVGQNLKYDRGILA-N-YGIELR----G-----Ia 439  Escherichia c...
NP_046860      77 m---------------------LgrEEVHEALDVLN--------KIVMQNASYDLQVLD-RcFGIKMEslwpK-----I- 120  Mycobacterium...
YP_001633981  407 v---------------------V--TALAPFFANPQq-------PKFAHNAKFDMEVLAg--AGIKVS----G-----La 445  Chloroflexus ...
AAA03732      275 i---------------------V--KFLRKLLEREDl-------EFIAHNGKFDIRWLR-AsLDIYLD----Is----I- 314  Bacillus phag...
YP_003068707  489 vkggdlfgesgagadasdrqpgQ--IDFDTALKLLKplledagtLKVGQNLKYDLSVLHr--YGIDVT----P-----F- 554  Methylobacter...
NP_039708      77 v--------------------fI--EDVRIAIGALK--------RMVLQNASFDLQVLDqC-FGIEME----Glw-prV- 119  Mycobacterium...
ADD72258      491 a--------------------vM--HQLRRLWNDETl-------TLVMHNGKFDYHVMHrA-GVFEHC----Ac---nI- 532  Treponema pal...
2HBJ_A        186 FDTYHASK----A------IGLP-R-HSLAY---LL---ENF---ANFKTSK--KYQLADWRIRP-LSKPMTAAARADTH 241  baker's yeast
Q55971        489 LASYVLQPe---E------THNL-TdLCRRY---NL---GLV---ALSYKDL--GLKKDQTIADL-PLETAGQYCGLDCY 546  Synechocystis...
Q9ZIG3        437 FDTMVAHY----L------IAPE-EpHNLDV---LArqyLRY---QMVAITEliGSGRDQKSMRDvSIDEVGPYACEDTD 499  Rhodothermus ...
ZP_03085653   440 FDTMLESYi---Lns---vAGRH-DmDSLAErwlKH---KTI---TFEEIAG--KGKNQLTFNQI-ALEEAGRYAAEDAD 503  Escherichia c...
NP_046860     121 LDTQILAKl---V------DPRPfGaGGFGH---SL---EEL---IAEFISK--EQAENVKGLMA-KLAKEHKTTKAKIW 179  Mycobacterium...
YP_001633981  446 FDTMIAAAm---Lgkr-qgLKDL-AfYELKL---PE---PPT---TIEDLIG--RGNKQISFAEV-PVEQAAPYAAADAL 508  Chloroflexus ...
AAA03732      315 WDTMLIHIi---DyrgerySWSK-RlAWLET---DM---GGYddaLDGEKPK--GEDEGNYDLIP--WDILKVYLADDCD 380  Bacillus phag...
YP_003068707  555 DDTMLISYvldaG------KGGH-GmDELAR---RHlghQPI---TFADVAG--TGRNKVTFDRV-AIDKATAYAAEDAD 618  Methylobacter...
NP_039708     120 LDTQILAKlv-dP------RPFE-Ag-GFGH---SL---EEL---IAKFISE--DQAENVKKLMA-KLAAEHKTTKAKIW 178  Mycobacterium...
ADD72258      533 FDTMVAAWlldpD------RGTY-GmDVLAA---SF---FQI---RTITFEE--VVAKGQTFAHV-PYECAVRYAAEDAD 593  Treponema pal...
2HBJ_A        242 FLLNIYDQLRNKLI 255  baker's yeast
Q55971        547 ATYLLASKLQKELD 560  Synechocystis sp. PCC 6803
Q9ZIG3        500 IALQLADVLAAELD 513  Rhodothermus sp. 'ITI 518'
ZP_03085653   504 VTLQLHLKMWPDLq 517  Escherichia coli O157:H7 str. EC4024
NP_046860     180 STIDLYHPeyltya 193  Mycobacterium phage D29
YP_001633981  509 YTLRLTERLQRQLE 522  Chloroflexus aurantiacus J-10-fl
AAA03732      381 VTFRLSEKYIPLVE 394  Bacillus phage SP01
YP_003068707  619 VTLRLWRMMKPRLV 632  Methylobacterium extorquens DM4
NP_039708     179 STIDLFHPEYLLYA 192  Mycobacterium phage L5
ADD72258      594 ITFRLYHYLKLRLE 607  Treponema pallidum subsp. pallidum str. Chicago
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