1CY1,2GAI,2O19


Conserved Protein Domain Family
TOP1Bc

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smart00436: TOP1Bc 
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Bacterial DNA topoisomeraes I ATP-binding domain
Extension of TOPRIM in Bacterial DNA topoisomeraes I and III, Eukaryotic DNA topoisomeraes III, reverse gyrase beta subunit
Statistics
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PSSM-Id: 214662
Aligned: 42 rows
Threshold Bit Score: 70.6892
Created: 12-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1CY1_A       136 YSRVVFNEITKNAIRQAFNKPGELNIDRVNAQQARRFMDRVVGYMVSPLLWKKIAr--GLSAGRVQSVAVRLVVEREREI 213 Escherichia coli
O34204       136 KNIITFTEITERAIKEAVKNPREIDMNKVNAQLARRVLDRIVGYMISPLLWRIIKd--ARSAGRVQSAALKIICERERER 213 Fervidobacteriu...
O84649       104 IQRISFNAITKGAVTEALKHPREIDMALVNAQQARRFLDRIVGYKISPILGRKLQrwsGVSAGRVQSVALKLVVDREYAI 183 Chlamydia trach...
ZP_06873302  105 dcRVVFNEITKDAIKESFKHPRMINMDLVDAQQARRILDRLVGYKISPILWKKVKk--GLSAGRVQSVALRLIIDREKEI 182 Bacillus subtil...
NP_220709    108 fKRVAFNEITKKAIMNAVANPRKLDTNLVNAQQARRALDYLVGFTLSPLLWRKLp--gCKSAGRVQSVALRLICDREDEI 185 Rickettsia prow...
NP_439516    140 fSRVVFNEITKNAIKQAFEKPEQLNMDRVNAQQTRRFLDRVVGFMVSPLLWKKVAr--GLSAGRVQSVAVKLLVEREREI 217 Haemophilus inf...
YP_003346393 106 KNRIVFSEITPRVIREAVKNPREIDMKKVRAQLARRILDRIVGYSLSPVLWRNFKt--NLSAGRVQSATLKLVCDREREI 183 Thermotoga naph...
ADO04864     105 YPRIVFHEITQNAILNALKTPRKIDMSKVNAQQARRFLDRIVGFKLSSLIASKITk--GLSAGRVQSAALKLVIDKEREI 182 Helicobacter py...
ZP_03772605  118 YKRMIFHEITETAITESLKNTRNIDMNLVNAGEARRILDRLYGYTISPLLWKKVAy--GLSAGRVQSVGLKLLIEKEKTR 195 Borrelia sp. SV1
2GAI_A       106 knRIVFSEITPRVIREAVKNPREIDMKKVRAQLARRILDRIVGYSLSPVLWRNFKs--NLSAGRVQSATLKLVCDREREI 183 Thermotoga mari...
1CY1_A       214 KAFVPEEFWE 223 Escherichia coli
O34204       214 YRFVPQKYFK 223 Fervidobacterium islandicum
O84649       184 ERFVPVEFWN 193 Chlamydia trachomatis
ZP_06873302  183 NDFKPEEYWT 192 Bacillus subtilis subsp. spizizenii ATCC 6633
NP_220709    186 ERFKSEEYWD 195 Rickettsia prowazekii str. Madrid E
NP_439516    218 KAFQPEEYWE 227 Haemophilus influenzae Rd KW20
YP_003346393 184 LRFVPKKYHK 193 Thermotoga naphthophila RKU-10
ADO04864     183 KAFKPLTYFT 192 Helicobacter pylori Sat464
ZP_03772605  196 INFKKANYYs 205 Borrelia sp. SV1
2GAI_A       184 LRFVPKKYHr 193 Thermotoga maritima MSB8
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