1UB1


Conserved Protein Domain Family
MBD

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smart00391: MBD 
Click on image for an interactive view with Cn3D
Methyl-CpG binding domain
Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Statistics
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PSSM-Id: 128673
View PSSM: smart00391
Aligned: 11 rows
Threshold Bit Score: 85.8858
Threshold Setting Gi: 75098832
Created: 13-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1UB1_A         30 GPMYDDPtLPEGWTRKLKQRKSG--RSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNd-------FDFTVTGR 100  chicken
Q23590        326 EAMLRLP-LQLGWRRQTCVRSIA--SAGVKGDVSYFAPCGKKLSTYSEVVRYLTKNSIHYITRDn-------FLFNTKLV 395  Caenorhabditi...
O88974        614 KNPLLVP-LLYDFRRMTARRRVN---RKMGFHVIYKTPCGLCLRTMQEIERYLFETGCDFLFLEm-------FCLDPYVL 682  house mouse
O49655        106 IDKPGLPrTPRGFKRSLILRKDY-----SKMDAYYITPTGKKLKSRNEIAAFIDANQDYKYALL--------GDFNFTVP 172  thale cress
Q24552         38 ATSYNGN-LAPGWRRLTN-----------NNEVAYISPSGKTLRTQFQIKDYLLTQGTCKCGLPcplrpeylFDFNAQVP 105  fruit fly
AAB60864      191 PEEVRLP-LQHGWRREVRIKK-G--SHRWQGETWYYGPCGKRMKQFPEVIKYLSRNVVHSVRREh-------FSFSPRMP 259  human
NP_003916      79 GTECRKS-VPCGWERVVKQRLFG--KTAGRFDVYFISPQGLKFRSKSSLANYLHKNGETSLKPEd-------FDFTVLSK 148  human
O42403         93 GPMYDDPtLPEGWTRKLKQRKSG--RSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNd-------FDFTVTGR 163  chicken
XP_003354028    3 RKRWECPaLPQGWEREEVPRRSG--LSAGHRDVFYYSPSGKKFRSKPQLARYLGGSMDLST-----------FDFRTGKM 69   pig
ABM88148        3 EDWLDCPaLGPGWKRREVFRKSG--ATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTL-----------FDFKQGIL 69   pig-tailed ma...
AAK21437      833 NSPIHTP-LLCGWRRIMYTMSTGkkRGAVKKNIIYFSPCGAALHQISDVSEYIHVTRSLLTI-Dc-------FSFDARID 903  nematode
1UB1_A        101 GSPSRRE 107  chicken
Q23590        396 IGEFIVP 402  Caenorhabditis elegans
O88974        683 VDRKFQP 689  house mouse
O49655        173 KVMEETV 179  thale cress
Q24552        106 NQPLKLP 112  fruit fly
AAB60864      260 VGDFFEE 266  human
NP_003916     149 RGIKSRY 155  human
O42403        164 GSPSRRE 170  chicken
XP_003354028   70 LMSKMNK 76   pig
ABM88148       70 CYPAPKA 76   pig-tailed macaque
AAK21437      904 TATYITV 910  nematode
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