2DLL


Conserved Protein Domain Family
IRF

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smart00348: IRF 
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interferon regulatory factor
interferon regulatory factor, also known as trytophan pentad repeat
Statistics
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PSSM-Id: 128642
View PSSM: smart00348
Aligned: 20 rows
Threshold Bit Score: 93.1659
Threshold Setting Gi: 18653871
Created: 13-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2DLL_A      8 KLRQWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQDYNrEEDAALFKAWALFKGKFREGIDKP-----------DP- 75  human
P88946     91 SIKDWIVCQVNSGKFPGVEWEDEERTRFRIPVTPLADPCFEwRRDGELGVVYIRERGNMPVDASFK-----------G-- 157 Human herpesvirus 8
ADN86151    7 RILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQqE-DFGIFQAWAEATGAYVPGRDKP-----------DL- 73  human
BAG73303   13 LFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLS-EADARIFKAWAVARGRWPPSSRGG-----------GPp 80  synthetic construct
BAE35453   11 LFGDWLLGEVSSGQYEGLQWLNEARTVFRVPWKHFGRRDLD-EEDAQIFKAWAVARGRWPPSGVNLpppeaeaaerrER- 88  house mouse
NP_570800  12 SLRGWLVECCETGRHPGMRWVDEERTLIRIPWNHDRGSRGVeEAEKNIFIDYCRSRGILHAAGREL-----------TAk 80  Rhesus rhadinovirus
AAF60042   16 GLRAWLLDCCDNDKHPGMHWLDEEKTLVRLPWNHLKGAGGVsDDERNMYLDYCQFKGIRQTGNRRL-----------SVr 84  Rhesus monkey rhad...
AAF60037    7 DIRAWLVAAVESGEYRGLVWENEDKTVVRVPWNKVTADRSVwNSEK-FFDDYCNMRGICQGEKPSH-----------YGr 74  Rhesus monkey rhad...
NP_570802  16 ALKEWLTFKADSGLYPGLFWADEQKTRLVLAATPPSFPNYDyQRDGQHYDAYCELRHIPLPSGRSR-----------L-- 82  Rhesus rhadinovirus
NP_570798  16 GLREWIVTHANLATYSGLFWADDEKTRVVLATTTPWSVGFDyLRDGKMYEDYCNQRNIPLPSGRSR-----------LG- 83  Rhesus rhadinovirus
2DLL_A     76 --------PTWKTRLRCALNKSNDFEELVERSQlD-ISDPYKVYRIVPE 115 human
P88946    158 --------TRGRRRMLAALRRTRGLQEIGKGIS-Q-DGHHFLVFRVRKP 196 Human herpesvirus 8
ADN86151   74 --------PTWKRNFRSALNRKEGLRLAEDRSK-D-PHDPHKIYEFVNS 112 human
BAG73303   81 peaetaerAGWKTNFRCALRSTRRFVMLRDNSG-D-PADPHKVYALSRE 127 synthetic construct
BAE35453   89 --------RGWKTNFRCALHSTGRFILRQDNSG-D-PVDPHKVYELSRE 127 house mouse
NP_570800  81 e------cKNWLSSAIRHSQTVSDVSTKDNLST-P-YPDRCRIIRLLPI 121 Rhesus rhadinovirus
AAF60042   85 e------cKNWLASAIRHSQTVEDVSTEENLSA-P-APNRCRVIRLLPI 125 Rhesus monkey rhadinovirus H26-95
AAF60037   75 f------rKMRFLYDMRHHKSIRELKFINKAYG-R-PGARYRLFRLLPE 115 Rhesus monkey rhadinovirus H26-95
NP_570802  83 --------CQARGRLLGAVRKSKYFEEDKEFPT-DqFPFTALVFRLRSS 122 Rhesus rhadinovirus
NP_570798  84 ---------QAKARLLGAIRKSAYFIEEKDVLR-RsFSFANVVFRLRSD 122 Rhesus rhadinovirus
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