1II5,2RCA,2V3U,3R7X,1PB8


Conserved Protein Domain Family
PBPe

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smart00079: PBPe 
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Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
Prokaryotic homologues are represented by a separate alignment: PBPb
Statistics
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PSSM-Id: 197504
Aligned: 32 rows
Threshold Bit Score: 86.1893
Created: 13-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1II5_A       103 TatplFRSVGDLKN-----KEVAVVRDTTa-VDWANFYQ----------------ADV-----------------RETNN 143  Synechocystis sp.
CAA18740     675 Ey---TRSCCSAHL------AICGTNHNIklHSESYIDSysat--------akltNQRsrhthqqqwtswvsgrlVPLGS 737  thale cress
AAC33239     659 T----VTNWKDLIKf----NKNIGYQRGT--FVRELLKSqgfde-------sqlkPFG-----------------SAVEC 704  thale cress
NP_194899    662 Tet-sIKNVLAK-------GGPVAYQRDS--FVLGKLREsgfpe-------srlvPFT-----------------SPEKC 707  thale cress
NP_565744    673 A----ITGIDSLRAs----EVPIGYQAGT--FTLEYLTYslgma------rsrlvPLD-----------------STEEY 719  thale cress
NP_180474    661 T----VTNVNDLIK-----NRDCVGYQGG--A---FVKDil-------------lGLGfhedq-------lkpfdSAKDA 706  thale cress
A84550       706 P----IKGVDTLISs----TGRIGFQVGS--FAENYMTDelnia------ssrlvPLA---------------------S 748  thale cress
NP_001189655 646 R----IEGMDTLIAs----NEPIGVQDGT--FAWKFLVNelnia------psriiPLK-----------------DEEEY 692  thale cress
2V3U_A       116 S----IQSLQDLSKq---tDIPYGTVLDS--AVYQHVRMkglnpferdsmysqmwRMInr-------------snGSENN 173  Norway rat
1PB8_A       155 R----ITGINDPRLrnpsdKFIYATVKQS--SVDIYFRRqvel--------stmyRHM------------------EKHN 202  Norway rat
1II5_A       144 LTAAITLLQK-KQVE---AVMFDRPALIYYTRQnpNLN---LEVTEI-RVSLEPYGFVLKENS----------------- 198  Synechocystis sp.
CAA18740     738 PKEYAAALQN-GTVA---AIVDERPYVDLFLSE--FCG---FAIRGQ-EFTRSGWGFAFPRDS----------------- 790  thale cress
AAC33239     705 DELFSNGT---ITAS-----FDEVAYIKVILSQ--NSS---KYTMVEpSFKTAGFGFVFPKKS----------------- 754  thale cress
NP_194899    708 EELLNKGPSK-GGVS---AAFMEVPYVRVFLGQ--YCKkykMVEVP---FDVDGFGFVFPIGS----------------- 761  thale cress
NP_565744    720 EKALKLGPTNwGGVA---AIVDELPYIELFLAE--RTG---FKIVGE-PFMHRGWGFAFKRDS----------------- 773  thale cress
NP_180474    707 DDLLSKGKSK-GIAA----AFDEVAYLKAILSQ--SCSk--YVMVEP-TFKTGGFGFAFPKNS----------------- 759  thale cress
A84550       749 PEEYANALQN-GTVA---AIVDERPYIDLFLSD--YCK---FAIRGQ-EFTRCGWGFVSHPSSeyllslpaclniilitf 818  thale cress
NP_001189655 693 LSALQRGPRG-GGVA---AIVDELPYIKALLSNs-NCK---FRTVGQ-EFTRTGWGFAFQRDS----------------- 746  thale cress
2V3U_A       174 VLESQAGIQK-VKYGn-yAFVWDAAVLEYVAINdpDCS---FYTVGN-TVADRGYGIALQHGS----------------- 230  Norway rat
1PB8_A       203 YESAAEAIQA-VRDNklhAFIWDSAVLEFEASQ--KCD---LVTTGE-LFFRSGFGIGMRKDS----------------- 258  Norway rat
1II5_A       199 -------------PLQKTINVEMLNLLYSRVIAEFTERWLGP 227  Synechocystis sp.
CAA18740     791 -------------PLAIDMSTAILGLSETGQLQKIHDKWLSR 819  thale cress
AAC33239     755 -------------PLTDDVSRAILNVTQGEEMQHIENKWFKK 783  thale cress
NP_194899    762 -------------PLVADVSRAILKVAESNKATQLETAWFKN 790  thale cress
NP_565744    774 -------------PLAIDMSTAILKLSETRKLQEIRKKWLCK 802  thale cress
NP_180474    760 -------------PLTGEFSRAILNLTQNNVTQQIEDRWFPK 788  thale cress
A84550       819 lhflfkkafprdsPLAVDMSTAILGLSETGELQKIHDRWLSK 860  thale cress
NP_001189655 747 -------------PLAVDMSTAILQLAEEGKLEKIRKKWLTY 775  thale cress
2V3U_A       231 -------------PYRDVFSQRILELQQSGDMDILKHKWWPK 259  Norway rat
1PB8_A       259 -------------PWKQNVSLSILKSHENGFMEDLDKTWVRY 287  Norway rat
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