1XT8,3MPK


Conserved Protein Domain Family
PBPb

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smart00062: PBPb 
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Bacterial periplasmic substrate-binding proteins
bacterial proteins, eukaryotic ones are in PBPe
Statistics
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PSSM-Id: 214497
Aligned: 68 rows
Threshold Bit Score: 77.7537
Created: 13-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1XT8_A       45 VVRIGVf--GDKPPFGYVDEKgnnqGYDIALAKRIAKELFgdeNKVQFVLV-EAANRVEFLKSNKVDIILANFTq-TPQR 120 Campylobacter je...
O83330       65 TLVMGVs--DRTPPMCFRYPNgeivGFDVDLARAVCRVLG---VRLIIRPI-KWTLKRNALRCGLVDCVWTAFAv-TARR 137 Treponema pallidum
O83331       49 SLPSSV----VPPPARCSLLLqearGYDVELLAQVARRLH---MDVQVKVV-HWDEKERALHAGVIDCIADGFTy-TADH 119 Treponema pallidum
O84493       54 QFGIYT---------SGINA------FVNDLVSEINYKEG---LNISIVNQ-DWVHLFENLDDKKTSGAFTSASp-SIEM 113 Chlamydia tracho...
O30148       24 KLKVGIlpiEDSLPIVVADE------------QGFFKKHG---LDVEVIQFsSAVERDAALTAGEVDAVITDPLa----- 83  Archaeoglobus fu...
AAB18088     43 NVTVAYq--TSAEPAKVAQAD-----------NTFAKESG---ATVDWRKFdSGASIVRALASGDVQIGNLGSSplAVAA 106 Escherichia coli...
NP_395382    44 NLPVWV-----------AQE------------KGFFRKNG---LNVKMDYTpNSGQLVRNLLNGKYNIAVAGIDn-VIAY 96  Yersinia pestis ...
ZP_05848708  44 SLYVGT---INNQISYFINKds-erGFEYELAKAFADTLG---VELEMKIFdNQEQLFDELDKHNIDLAAAHLLy-HPKN 115 Haemophilus infl...
BAA10908      1 MSTIHT-------PLTYNEINgkpfGLDYELAKQFADYLG---VKLKVTVRqNISQLFDDLDNGNADLLAAGLVy-NSER 69  Escherichia coli...
AAC08596     38 VLRVTTt--GDYKPFSYRTEEggyaGFDVDMAQRLAESLG---AKLVVVPT-SWPNLMRDFADDRFDIAMSGISi-NLER 110 Pseudomonas aeru...
1XT8_A      121 ae-----qVDFCSPYMKVA-----LGVAVPKDSN--------------ITSVEDL--KDKTLLLNK----GTTADAYFTQ 170 Campylobacter je...
O83330      138 rt-----eFLLSEPYLRTA-----QVLLVREGRLhp----------dlAHVEREL--GQRMTGVSAvhtrGDILPMRSSH 195 Treponema pallidum
O83331      120 ar-----rFALTQPYVRDV-----RVFAVLRQAP--------------YATVADL--HGKRLGVHAv---TDVEENDAYH 170 Treponema pallidum
O84493      114 la-----rYQFSDPVLLTG-----PVLVVLENSP--------------YHSLQDL--EGKLIGVY-----KFDSSVLIAQ 162 Chlamydia tracho...
O30148       84 -------vILLRDKGYDVR-----IASLCLGKTPkegvfailaapnsdIDSVEDL--DGKEIAVSL----NTIIEYALDV 145 Archaeoglobus fu...
AAB18088    107 sq-----qV-PIEVFLLASklgnsEALVVKKt----------------ISKPEDL--IGKRIAVPFi---STTHYSLLAA 159 Escherichia coli...
NP_395382    97 qegqvkepVVNPDMFAFYGv---dNGLLSLVANPq-------------IKNISDL--KGKQVSVDA----LTTGYAFVIR 154 Yersinia pestis ...
ZP_05848708 116 ae-----rFQIGPAYHSAS-----WQLAYRKNENr-------------PKNLGNV---KKDIYISN----NLALEETLKE 165 Haemophilus infl...
BAA10908     70 vk-----nYQPGPTYYSVS-----QQLVYKVGQYr-------------PRTLGNL--TADRLTVAP----GHVVVNDLQT 120 Escherichia coli...
AAC08596    111 qr-----qAHFSIPYLRNSk---tPITLCSEEAR--------------FQTLEQIdqPGVTAIVNP----GGTNEKFARA 164 Pseudomonas aeru...
1XT8_A      171 N----------------------YPNIKTLKYDQN-----TETFAALMDKRGDALSHDNTLLFAWVKDH---PDFKMGIK 220 Campylobacter je...
O83330      196 RqariavlrggpvpgnekwqfgfEPHGKVVWYRHR-----SAMLEALRTRAVDAALVDLVEAHDAVHRQg--APLRVMRV 268 Treponema pallidum
O83331      171 A-----------------------LFGQVKTYAHY-----VQALTALSRAEVDVVALNLVTLCAVTPHLr--RLYRILDE 220 Treponema pallidum
O84493      163 N----------------------VPNAVIDSYQHI-----PVALEALSTQRYDALLVPVIEATALVETAy-kGRLRIASE 214 Chlamydia tracho...
O30148      146 Mls------------------eyGLNYTKISIPKI-----PIRMQALLNGNVETAVLPEPLASYAVSKGaklILSDAMLN 202 Archaeoglobus fu...
AAB18088    160 Lkh------------------wgIKPGQVEIVNLQp----PAIIAAWQRGDIDGAYVWAPAVNALEKDGkvlTDSEQVGQ 217 Escherichia coli...
NP_395382   155 Nylek--------------ngltQNDVHYTSVGST-----NDRFNALLAGKTDATLLRTP-LNLQAKENg-fKILASGSE 213 Yersinia pestis ...
ZP_05848708 166 L----------------------QKQYPQLIWKRNqaltqEELLLQLAEGKIPYVIANSIDIAAIQQIK---PELAIAFD 220 Haemophilus infl...
BAA10908    121 Lke------------------tkFPELSWKVDDKKg---sAELMEDVIEGKLDYTIADSVAISLFQRVH---PELAVALD 176 Escherichia coli...
AAC08596    165 N----------------------LKKARILVHPDN-----VTIFQQIVDGKADLMMTDAIEARLQSRLH---PELCAVHP 214 Pseudomonas aeru...
1XT8_A      221 ELGNk-DVIAPAVKKGDK-----ELKEFIDNLIIKLGQEQFfhkAYDETL 264 Campylobacter jejuni
O83330      269 PLGL--SQYAVAFRREDR-----ALRDEIQRILYRIAASGEayrIAEKWF 311 Treponema pallidum
O83331      221 PIDT--CEYVFAFRADAR-----ALRDMVVRTLSQLQREGFvsaLSKRWF 263 Treponema pallidum
O84493      215 PLNE--EGLRLVVLRGGGs---dSLLEGFNAGLAKIRRSGRyk--aIKMQ 257 Chlamydia trachomatis
O30148      203 ESIT---QTVIVFRGDVDdekvqKFLEAYREAVREINANK------EKYR 243 Archaeoglobus fulgidus
AAB18088    218 WGAP--TLDVWVVRKDFAe----KHPEVVKAFAKSAID------AQQPYI 255 Escherichia coli str. K-12 substr. MG1655
NP_395382   214 LGDYq-GTTGITTRSWAA-----QNGDILVSYIRSYIDG-------LNWI 250 Yersinia pestis CO92
ZP_05848708 221 ITDEa-NVHWYLPNNPYR-----DLQTALLNFMNNAEETGLldnLKEKYL 264 Haemophilus influenzae RdAW
BAA10908    177 ITDEq-PVTWFSPLDGDN-----TLSAALLDFFNEMNEDGTlarIEEKYL 220 Escherichia coli K12
AAC08596    215 QQPFdfAEKAYLLPRDE------AFKRYVDQWLHIAEQSGLlrqRMEHWL 258 Pseudomonas aeruginosa PAO1
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