Conserved Protein Domain Family
COLFI

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smart00038: COLFI 
Fibrillar collagens C-terminal domain
Found at C-termini of fibrillar collagens: Ephydatia muelleri procollagen EMF1alpha, vertebrate collagens alpha(1)III, alpha(1)II, alpha(2)V etc.
Statistics
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PSSM-Id: 197483
Aligned: 11 rows
Threshold Bit Score: 299
Created: 12-Jul-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q90412        229 DVEVDATLKSING---QIEDIRSPDGSR-KNPARSCRDLKLCHPEWKSGDYWVDPNLGSAADAIKVFCNMET----G--E 298  zebrafish
P90679        460 DENAFEALVEIGD---AIEAFKNPTGTH-AAPARTCKDLAMAHPEFEDGMYWVDPNQGSPVDAIEVFCDIQA----H--Q 529  lugworm
Q26052        516 DDELLASINSLSQ---QIEMIKTPQGKSqNNPARSCKDIFLNDANAESGTYWVDPNLGCHQDAIQVHCEQET----Q--A 586  common urchin
Q26055        823 RTKFELYLAKFDN---EIRSLLEPLGSR-DQPIRSCKDLFKCFQRPKMATTGSDSNEGSIKDRFLAHCVKRGesgsP--E 896  common urchin
NP_001106695 1183 DAEVDATLKSLNN---QIESLRSPEGSR-KNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMET----G--E 1252 cattle
P12105       1027 LGEIMSSMKSINN---QIENILSPDGSR-KNPARNCRDLKFCHPELKSGEYWIDPNQGCKMDAIKVYCNMET----G--E 1096 chicken
NP_001073182 1127 DYEVDATLKTLNN---QIETLLTPEGSK-KNPARTCRDLRLSHPEWSSGFYWIDPNQGCTADAIRAYCDFAT----G--E 1196 chicken
BAG61932      128 DPGVHATLKSLSS---QIETMRSPDGSK-KHPARTCDDLKLCHSAKQSGEYWIDPNQGSVEDAIKVYCNMET----G--E 197  human
EAW88129     1175 MEEIFGSLNSLKL---EIEQMKRPLGTQ-QNPARTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYCNFTA----Gg-S 1245 human
CAQ11078     1454 LEEIFGSLDSLRE---EIEQMRRPTGTQ-DSPARTCQDLKLCHPELPDGEYWVDPNQGCARDAFRVFCNFTAg---G--E 1524 human
AAA29119      342 TDVNLGSVADVIElhkKLQHLKSPTGTK-DSPARSCHDLFLEDNSTSDGYYWIDPNGGCIGDAVKVFCNFTG----GvqQ 416  Mueller's fre...
Q90412        299 TCVKPSTPKIPRKNWWTSK-Ska-qK---HVWFGESMNGGFHFSYADGSqtpstttIQLNFLRLLSTEATQTITYHCKNS 373  zebrafish
P90679        530 TCVMAKPGQIFKGVWYRGE-P----G---HVWFADEMENGLLVHLQGGN-------VQMTFLQLLSTEAVQNITYHCKNS 594  lugworm
Q26052        587 TCVSPSMSQIINSTWYVGK-V--------KRTYFSTMEGGDKFSYIEEP-------TQMTFLRLLSTSARQTVTYYCKNV 650  common urchin
Q26055        897 TCITPRVDEIAPARWYEGA-S--------GSRYDLRMG-LDKFSYEASE-------VQLTFLRLLSTKAHQNVTYHCKNS 959  common urchin
NP_001106695 1253 TCVYPNPASVPKKNWWSSK-S----KdkkHIWFGETINGGFHFSYGDDNlapntanVQMTFLRLLSTEGSQNITYHCKNS 1327 cattle
P12105       1097 TCLSANPATVPRKNWWTTE-Ssg-kK---HVWFGESMKGGFQFSYGDPDlpedvseVQLAFLRILSSRASQNITYHCKNS 1171 chicken
NP_001073182 1197 TCIHASLEDIPTKTWYVSK-NpkdkK---HIWFGETINGGTQFEYNGEGvttkdmaTQLAFMRLLANHASQNITYHCKNS 1272 chicken
BAG61932      198 TCISANPSSVPRKTWWASK-Spd-nK---PVWYGLDMNRGSQFAYGDHQspn-taiTQMTFLRLLSKEASQNITYICKNS 271  human
EAW88129     1246 TCVFPDKKSEGARITSWPKeN----P---GSWFSEFKR-GKLLSYVDAEgnp-vgvVQMTFLRLLSASAHQNVTYHCYQS 1316 human
CAQ11078     1525 TCVTPR-------------------------------DDVTQFSYVDSEgsp-vgvVQLTFLRLLSVSAHQDVSYPCSGA 1572 human
AAA29119      417 TCISATKNAGDLKSW-SGH-S---------IWFSDML-GGFKLTYDISR-------SQLQFIRAASRHAVQSFTYKCRNS 477  Mueller's fre...
Q90412        374 VAYMDQATGNLKKAILLQGSNDVEIRAEgNSRFTYGVLE-DGCKKHTGQWAKTVIEYKTQKTSRLPIMDIAPMDIGGADQ 452  zebrafish
P90679        595 VAYYDKANDNLDSAAMFMTSNDLELNAD-KPKFRYEVLL-DECQHKQSKWTKTVFEFKTTKTRRLPIVDIAPSDIGGEDQ 672  lugworm
Q26052        651 AG-----------NPIFRSSSEIELVDDeTSKFNYNIIE-DGCSTATSQKGKSVYEYETKKTTRLPIVDFAPGEVGLENQ 718  common urchin
Q26055        960 VAVHNSQTGSTEQALRLMTTSDVELSPDaPFLEQYEVIGeDGCQDRSAELSQTVIKYSTRRNTRLPIVDVAPSDIGGVDQ 1039 common urchin
NP_001106695 1328 IAYLDEAAGNLKKALLIQGSNDVEIRAEgNSRFTYTVLK-DGCTKHTGKWGKTMIEYRSQKTSRLPIIDIAPMDIGGPEQ 1406 cattle
P12105       1172 IAYMNQASGNVKKALKLMSSVETDIKAEgNSKYMYAVLE-DGCTKHTGEWGKTVFEYRTRKTMRLPVVDIAPIDIGGPDQ 1250 chicken
NP_001073182 1273 IAYMDEETGNLKKAVILQGSNDVELRAEgNSRFTFSVLV-DGCSKKNNKWGKTIIEYRTNKPSRLPILDIAPLDIGGADQ 1351 chicken
BAG61932      272 VGYMDDQAKNLKKAVVLKGANDLDIKAEgNIRFRYIVLQ-DTCSKRNGNVGKTVFEYRTQNVARLPIIDLAPVDVGGTDQ 350  human
EAW88129     1317 VAWQDAATGSYDKALRFLGSNDEEMSYDnN--PYIRALV-DGCATKKGYQ-KTVLEIDTPKVEQVPIVDIMFNDFGEASQ 1392 human
CAQ11078     1573 AR---------DGPLRLRGANEDELSPE--TSPYVKEFR-DGCQTQQG---RTVLEVRTPVLEQLPVLDASFSDLGAPPR 1637 human
AAA29119      478 AA-----------AVIFRTQDNKEIAAN---KVTY-----DGCKSRPSVPDAAFVAVETKRVEQLPIRDFASSDIAGQHQ 538  Mueller's fre...
Q90412        453 EFGVDIGAVCFL 464  zebrafish
P90679        673 AFGLEIGPVCFS 684  lugworm
Q26052        719 KFGLEMGPVCFS 730  common urchin
Q26055       1040 EFGITLGPVCFS 1051 common urchin
NP_001106695 1407 EFGVDIGPVCFL 1418 cattle
P12105       1251 EFGVDVGPVCFL 1262 chicken
NP_001073182 1352 EFGLHIGPVCFK 1363 chicken
BAG61932      351 EFGVEIGPVCFV 362  human
EAW88129     1393 KFGFEVGPACFM 1404 human
CAQ11078     1638 RGGVLLGPVCFM 1649 human
AAA29119      539 EFGFEMGPACFY 550  Mueller's freshwater sponge
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