Conserved Protein Domain Family
SegE_GIY-YIG

?
pfam19835: SegE_GIY-YIG 
Putative endonuclease segE, GIY-YIG domain
This domain family is found in viruses. Proteins containing this domain are typically between 147 and 298 amino acids in length. They have a GIY-YIG domain at the N-terminal, which suggests they are likely to be endonucleases. Included in this family is the Putative endonuclease segE from Bacteriophage T4.
Statistics
?
PSSM-Id: 498322
Aligned: 27 rows
Threshold Bit Score: 119.335
Created: 20-Feb-2025
Updated: 28-Apr-2025
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
YP_009324344  11 WIYRGTPFD--GSLIGDNYGFVYKITCSTTNRSYIGRK-YFWQKRKP--RNtgattKRRRVTSESN-------------- 71 
KXB06435       3 WECKNKPDL-------TQFGFVYCITNNKTGKAYIGCK-QYFNY------------KKRKRKSESN-------------- 48 
2_pfamImport   1 WTTTF------DFDPKDFLAFTYEIT-FRDGKKYIGVK-KFWKSLKV--PPnelspRSRKKVIPSD-------------- 56 
YP_004009476   8 WTVFK------EVDIKDYLAFTYVIT-FKNGKKYIGVK-KLWKKIKQ--CPsefkrGPKCGFIESD-------------- 63 
YP_003858543   7 WKTLK------DVDISNYLGFVYVIT-FENGKKYVGAK-KIWKRIKV--PPssfkrGPRKGFEESD-------------- 62 
YP_007235911   7 WTVFE------EADIKKYIGFVYVIT-FENGKKYVGAK-KIWKRIKA--APdtfkrGPKKGFEESD-------------- 62 
1_pfamImport   1 WYHQGIEILdvSQIPEGVIGFVYRIDNLNNGKIYIGRK-AIQSKRKRk-------fGKREIAAMPNkrlkkwelvisemk 72 
YP_009844531  12 WTFNGKPFT--QEMVGKLEGFVYLITDRVNGKMYIGKK-FFGGMRKA--KG-----AKRRSKIVSD-------------- 67 
YP_009212554   3 WYFEGKEFT--SEDIGKFKAFVYLITDLVSGRKYIGKK-TFYNKKTL--PPlkgqkRKRTKITESD-------------- 63 
YP_009609620   8 WMFHGQPFL---EVPKGVVSFVYKLTHAETGKAYIGKKgFFFAKTKQvkGK------KKRVKVDSD-------------- 64 
YP_009324344  72 -WRNYFGSSDELKADVAKYGRDAFTREILSLHETPGRVNYEETRQLFLHDVLTESLT-DGTPAFYNSNI 138
KXB06435      49 -WKAYMGSSKHLLEDIKKIGKKNFKFEIMGEFKNKRSLRYYECYYQMKYNVLTKTLEgTDEPAFYNNYV 116
2_pfamImport  57 -WKTYCSSSNDVEHLLYN-ENYPKSMIITGVYRTYGQACYREAYLQFVNHAIGSTE-------YLNKQI 116
YP_004009476  64 -WKTYSSSSNLVNEMLQE-GIEPESFVIVGWYKTWGKALMAEMELQLANDVLRDPM-------WLNKQI 123
YP_003858543  63 -WKTYTSSSKEVNDMISS-GIQPKDYLIVGWYDSWGKTLLAEAEMQFSNDVLRNPE-------WLNKQI 122
YP_007235911  63 -WKMYTSSSNELNQMLEN-GIVPKEYLIVGWYPTWGKTLMAEMEMQLANDVLRSNV-------WLNKQI 122
1_pfamImport  73 gWKSYTGSSEELNKDIAK--GDKIHKQILVYCTSKKELAYWESKYLFCEGTIESEN-------YYNGNI 132
YP_009844531  68 -WEKYFGSNDEIKRLVKEEGPQRFKREILSLHQLKRDVNFCEIREQWKRDVLEAVDA-NGERLYYNENI 134
YP_009212554  64 -WQSYHGSNEKIKALVDEHGSSRFKREILKLCRSNAESTYYEAKLQFEHDVLLRDD-------YYNDYI 124
YP_009609620  65 -WREYFSSSDEIKAMVAD--GQHFTREILHLCYGTGEANYLEAREQMDNRVLENPDK------WFNLQI 124
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap