Conserved Protein Domain Family
Phage_capsid_2

?
pfam19821: Phage_capsid_2 
Phage capsid protein
This entry represents a family of phage capsid protein. This family of proteins is found in bacteria and phage. Proteins in this family are approximately 280 amino acids in length.
Statistics
?
PSSM-Id: 498309
Aligned: 12 rows
Threshold Bit Score: 293.934
Created: 20-Feb-2025
Updated: 28-Apr-2025
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
OZG31505                        5 LRRKYgiKEQFAKNISLITQQEGSKLRKCVT-NGTQDTEVISFESMTTHEVESRNrraidpedhlhghytdagdPgRLEQ 83 
WP_004900974                   12 ITAGF--KRQFHDTFEVQCQQTQSALQMGVEdRGAISGASFTINDLGSVEMQASG-------------------S-RFGD 69  Acinetobacter brisouii...
jgi:Amuc_1497                  48 ISDNY--QVKYTRKWGSLLQQHASRLDKYVSvMRDLSGKVVFLDQFGILDFTEKT-------------------T-RVGQ 105
WP_093312624                    5 VNTTA--QVQYNNNVEMVLQQQQSQLEWAVQvTDDSGTERIKVKDLVGNTLPQEA-------------------DeRHGD 63  Sphingomonas jatrophae...
WP_109902965                    5 IPAHL--APTFNTALELLLQQRGSLLRAYVQpGNQMGEGAQYINQIGKADPAEKN-------------------ApRLSA 63  Zavarzinia aquatilis...
YP_007517707                    5 ITTAF--VQQYSANVQMLSQQMGSLLRDKVRvES-VVGKNAFFDQVGSVTAVEKT-------------------S-RHSD 61 
WP_014743569                    5 ASLAT--QVDYDMRVKAAYGSKGGVLRPTARlKTDWVGTEVEFRLGDEIVAYPDD-------------------N-GVQD 62  Tistrella mobilis...
1_pfamImport                    1 VSPAF--VQLFESEVHQAYQEEGDKLAATVRtKSGVVGSSVNFPIFGKGAAQDRG-------------------A-SASD 58 
REF_CAMERA-phage:DVVG_00002T0   5 LDQAA--IASFDAMVKHAYQERG-KLRGTVRlKTGVVGSTHRFPKLSAGVATPRV-------------------P-Q-TD 60 
WP_024080477                    5 VINGY--SKDYGAQVHAAYQRQGTKLRNTVRtRNNVTGAIAVFQKVGKGSASTK--------------------A-RHGK 61  Magnetospirillum gryphiswaldense...
WP_044406290                    5 APNWY--TIQYDQKVNHLLQSEGFLLRGTTQaPVNVVGNTLQFFFIGRGEATEMS-------------------Q-AIEM 62  Rhodopseudomonas...
WP_090075617                    5 APTWF--VEQYKDGVIQKYQSKGFLLKSTVTpAGSIEGSKAYFNLMGKGKANKKK---------------------RGQA 61  Cohaesibacter marisflavi...
OZG31505                       84 IEFKIPTISRRFLT-ASAYHWNATMDRNDKLNL--LTDPTSHFPKMAGWAMGRQQDRVIISAFASPVRAGRtGsnvinfd 160
WP_004900974                   70 TVWSVPDSGTRLAL-MADYDLFVPIEPRDLPKL--AANPTDKYMQACLAAEMRQRDRIIYNALGASIQRKIvDge----- 141 Acinetobacter brisouii...
jgi:Amuc_1497                 106 TVLNEAPTTRRSMR-PRTFTKAIGYDEFDATRLgdMDLPVSKTIEGLQAAAGRRMDDVMISGFLDTNYVGE-Dg------ 177
WP_093312624                   64 LKQTNVPHDGVWLNkPNELYFLEYVDGADEMAT--KISLEGEYTMAAVGTINRARDHRILEGIYRPIISGKdAt------ 135 Sphingomonas jatrophae...
WP_109902965                   64 TPNMNVPGTARWVY-PNTFDWGTLIDKRDKLFQ--ITDPQSGYLEAASLEMGRQIDGEIIRAVFDVARTGKnGa------ 134 Zavarzinia aquatilis...
YP_007517707                   62 TPQIDTPHARRRVS-LADYEFADLIDQQDKVRL--LIDPTSSYAQAAAMAMGRAMDDVIISAALGTAFTGEtG------- 131
WP_014743569                   63 IKAANSGQDVVRTS-TRGWRAGDYIKTTDVNNT--NIDDRAQIARKVGGAMGRREDQVGIDALVTGQPS----------- 128 Tistrella mobilis...
1_pfamImport                   59 VPIMGVGNKTVKCD-LAKKIAADYSDVFDEVQL--NFDDRQELAVAIGYAMRRCEDQMIIDAMDTAHKAGG--------- 126
REF_CAMERA-phage:DVVG_00002T0  61 VVPMNLSHTNATVT-LEDWNAAEYTDVFDQQKV--NFSEREELAMSIAAAIQRREDQMIIDALEATATT----------- 126
WP_024080477                   62 VPVMNVDHQTVECQ-LYDYYAGDWLDKLDELKI--EHDERAVLVNAGAYALGRKTDELIIAELDKSTNY----------- 127 Magnetospirillum gryphiswaldense...
WP_044406290                   63 ITPANLDKTTKDVT-MKDYQFAEFIRHGEVERI--SVEFKSAIQEAGSMALGRKFDRVILQAMDNEDTA----------- 128 Rhodopseudomonas...
WP_090075617                   62 AVPMNAQKGRVEAV-LETWEAFDEVYKYDLARM--SANEKEAIQMAGAMALGRATDDEIMAKMDASSSTLAat------- 131 Cohaesibacter marisflavi...
OZG31505                      161 vvnnvvpvgikvTDTNFTLNAQAAVAANRavidskragLTVDKLIKAHHILKKRSFGMy------DKLYLLCSSNQISDL 234
WP_004900974                  142 ----------tyTATALPAAQQIGASSAP---------MNKAKIVRARKLFRQNHADN-------LPLYMIYNADILEQI 195 Acinetobacter brisouii...
jgi:Amuc_1497                 178 -----------mTAVPFKESQQIAVDHVDsgtk-sasnLTVAKLRAALQLFEENEAWNqdapqfgDQLVIAVTSSQIMNL 245
WP_093312624                  136 ------------IVTPFPAGQIVPVTVGGaggv--pqrFNVAKLRAADKLLTQGFVDVn------EEKFMVIDAEQNDDL 195 Sphingomonas jatrophae...
WP_109902965                  135 ------------TTVPFPAGNVVGKDVGGta-----sgLNVAKLRAAKKLLLKNFVNIn------EKPILVVTAEQHDNL 191 Zavarzinia aquatilis...
YP_007517707                  132 ------------------STSTANANSIAhgs----agLTIAKLRTAKQTLDLGDVDPs------IPRHIIVSPKQITDL 183
WP_014743569                  129 -----------------------VQIDTDvgga--gtgLNLAKLRRAKAYFDHLEVPEt-------DRYMLTHAMAIESL 176 Tistrella mobilis...
1_pfamImport                  127 -------------------AKAPNVVAADfgas-aagpLSIKKVKRAQTLLNRKGVPRk-------DRYLVYTPDGLDAL 179
REF_CAMERA-phage:DVVG_00002T0 127 -----------------------LTVASSvgga--ntdLNVAKLRRASRLLGDNAALDg------ETVTYVGSYIGRESL 175
WP_024080477                  128 ------------------------A--LDgt-----taLTKDKVLAAFEMLGEADVPDd------GERYAVVGWKQWSDL 170 Magnetospirillum gryphiswaldense...
WP_044406290                  129 ------------IDTIGDGSAAISPIDVStgka-einaLGMMKM---------------------NEFYLPVPSMSWEQL 174 Rhodopseudomonas...
WP_090075617                  132 ----------gsGMKPLLDANGLPAMVGGsa-----vaFDLKYLLLMASALKQADVPWd------GNVFCPLPSLLFDQA 190 Cohaesibacter marisflavi...
OZG31505                      235 LRDPQITNYDYNNV--RALV---SGEVN-SFLGFTFI-----TSEMLGGIYDntge-----gnqSRYAVRDCYAFN---E 295
WP_004900974                  196 LIDTELTKWDIQTI--QAIQ---DGDIAkKWAGFIWL-----PYEELASVTN------------TGVTTQTTYAFA---K 250 Acinetobacter brisouii...
jgi:Amuc_1497                 246 LRETEVSSYDFNNV--KALV---EGKID-TFMGFKFI-----RTQRLPKT---------------EEGVRSCLAWV---K 296
WP_093312624                  196 LSEVPATSSDFKGAfgGEFV---NGKIK-RLLGWNFIhmelrNPMLLTFQQGlt--------vdANGYTKNPF-WV---K 259 Sphingomonas jatrophae...
WP_109902965                  192 LADPQINSKDYNER--PVLV---DGQIS-QFMGFQFVh---cELSALPDgdt----------wtLSGNDRKCPFWV---P 249 Zavarzinia aquatilis...
YP_007517707                  184 LGTTEVTSSDFNTV--KALA---NGEVN-SFLGFNFI-----VSNRLAL----------------SSTTRSCIAFA---Q 233
WP_014743569                  177 LGQVEVTSADYANA--KALV---DGKVD-YFLGFRFKtigrrPEGGLPRVGNic----------------tsFAFHggaD 234 Tistrella mobilis...
1_pfamImport                  180 LDAEEVTTIDKNNV--KALV---DGDVD-TYLGFKFImindeTVTVIDPANPtatheiktglpgVGTADRKYFAYH---R 250
REF_CAMERA-phage:DVVG_00002T0 176 LAEEQTTSSDYNTI--KALV---NGEIN-SFMGMDFKwiasrSEGGLD----------------LTGGDRSTFAYC---R 230
WP_024080477                  171 LQIAEFSDADYVGD--DDLPw-kGTQAK-NWLGTLWM-----PHSGLT----------------KSGSVRHCYWYH---K 222 Magnetospirillum gryphiswaldense...
WP_044406290                  175 KLYKVFNNSDYTGP--D-LNfknGVEAK-TWNGVHFFq---lPDEAFTS---------------PSAGVVDTYLWN---K 229 Rhodopseudomonas...
WP_090075617                  191 CAYKQFNNADWTGA--D-LSftkATVTK-YWAGVHWFq---aPDDLFIENEEdhy---------------dieMYH---R 245 Cohaesibacter marisflavi...
OZG31505                      296 GAIRFNTVSgSNKKGIEELVQYHY-AKVLYYSEAFGASRDNEQAVVVIKCLE 346
WP_004900974                  251 GAVHYGRNS-IQDFDIATRPDKKN-VKQIGGIASYGAGRANEKKVVKIDYIV 300 Acinetobacter brisouii
jgi:Amuc_1497                 297 SKAQFGIWN-DFKVKLSVRDDMEE-ALQIRAKFACGATRLQEEGFVKILCDE 346
WP_093312624                  260 SGVRLNYWR-RLRTAIKDQPSKVD-TKSVFAGMTGAATRTQAGKVGIILNSE 309 Sphingomonas jatrophae
WP_109902965                  250 SGVHLNAWQ-EVQTKIDQRPDLKY-ATQLYTDMVLGGSRCEEGKVGAITCVE 299 Zavarzinia aquatilis
YP_007517707                  234 DGIALAVGK-DVNARIDERSDKSY-ATQVYYCMSIGATRMEEAKVVEVQCTE 283
WP_014743569                  235 GAIGMAWRF-EGRTMVDWVPE-KG-AYLVQGMIKAGAAVIDPLGVIRIEHTE 283 Tistrella mobilis
1_pfamImport                  251 RAVGYANGI-DKTTMADWVAQ-KA-SYLIQSHLFAGSVVIDPEGYVTILCKE 299
REF_CAMERA-phage:DVVG_00002T0 231 SALGHAIGL-DQRMEVNYIPQ-KT-SWLANMLFSANAIEIDAGGVVDVTCDE 279
WP_024080477                  223 TAIGHAVGS-EVKSEITYHGD-RA-AWFCNNMMSQGSALIDPAGVVSLRCLE 271 Magnetospirillum gryphiswa...
WP_044406290                  230 RTVGFGSNY-AIKTNITY--ENLFtAWLYNSTMSGAAKVLQTEGVKRLRIKI 278 Rhodopseudomonas
WP_090075617                  246 SSSGWANNS-ELESIWDW--DNRLgCWTVRMETEGAAGCFQPEGTVRGRFAV 294 Cohaesibacter marisflavi
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap