Conserved Protein Domain Family
RE_endonuc

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pfam19778: RE_endonuc 
Endonuclease domain
This represents the C-terminal endonuclease domain found in a variety of class III restriction endonuclease proteins.
Statistics
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PSSM-Id: 498270
Aligned: 23 rows
Threshold Bit Score: 113.122
Created: 20-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
CDS54612                870 ARSLYDeAFMpVDS-Q-IERVTVDELNQTR--VTVFAKLPK-IDIPTPA---GKYNPDFGYAITQ----DGTpQALYLVV 937 
WP_023275542            848 EKYLYD-TVI-YDS-E-LEKENILT-GDDK--IVVYGKIPK-NSISIPIfigGSYSPDFLYIVKH----SSGkYTINLII 915  Muc...
WP_111919620            859 DKYLYD-KIV-FDS-P-LEKANIMT-DIDE--VVVYGKIPK-SSVAIPTivgENYSPDFMYVVKH----KDGtKELNIVV 926  Bla...
OOH91229                855 ANYLFS-QIF-YDS-T-LEHHNIANEDIQE--VTVFTKIPK-NSIKIPVaggGTYSPDFAYIIKT----KQGe-ILNFVI 922 
WP_211290090            843 TKWVFE-DVIeYDS-D-FELEIVEQ-DPDMdsIEIFGKLPR-LKIKTPL---GDYNPDFCYAIKG----AEG-NKVFLVV 909  Muc...
WP_072879941            771 KRGVFD-KTL-VDS-E-VEHKFALTADNDDe-VVCFLKLPSyYKIKTPI---GEYEPDFGIVMKRknlkDGVeSEFYFVI 842  Sal...
2_pfamImport              1 RNGLYG-AEQ-FDS-T-IEQDFIKCADRE---FKFFAKLPKrFKIKTPL---GSYSPDFAII-------KHDeSEGSFII 63  
PRJNA378339:B4966_07315 809 EKTLFS-HIV-IDSnSgPERAFAQACEDNEd-VLFYIKLPRwFRIDTPV---GSYNPDWAVA-------YRNdTTLYFVA 875 
Q2NH30                  877 YKSPYE-YTI-FDS-G-IEKSFQEKLEFSNl-IKFYMKLPGwFEIDTPI---GKYNPDWAILVER----EGK-EELYFIV 943  Met...
1_pfamImport              1 SKSVYE-YVP-KDS-E-VESHFAQELEEQDe-VKLYVKLPSwFKIPTPL---GTYNPDWALVIED----NGE-NHIYFV- 66  
CDS54612                938 ETKDY---DDRSE-----IPVKEKWKIDSARQFFKALQalpelkdkgvQIRFETkINGE 988 
WP_023275542            916 ETKDV---KYESE-----LRDIEKMKIRSADKFFKELAqn------niKIHFTKqMKEE 960  Mucispirillum schaedleri
WP_111919620            927 ETKLV---ENKST-----LRGIEDAKIKCAEAFFKQLTid------gyTVSFHTqLSNK 971  Blautia argi
OOH91229                923 ETKNV---SSSET-----LRRSEQQKIRHAESLFAEISke-------iKVVFKTqFEGE 966 
WP_211290090            910 EAKGY---KTSTD-----IPPNEKGKIDFAKKYFDALSehyk--dqniKISYKErINRT 958  Mucilaginibacter auburne...
WP_072879941            843 ETKGTnniNDKKS-----LKESEVYKIKCALKHFEALGv---------DVKYKApVKEY 887  Salegentibacter echinorum
2_pfamImport             64 ETKGS---DKKRD-----SRAREDWQMEYAKKHFELI-----------GLKYRDrITNC 103 
PRJNA378339:B4966_07315 876 ETKRT---GNGDHvqldlLRPIEDLRIECGKRHFKNFE----------AVRFKV-VSTL 920 
Q2NH30                  944 ETKGT---SNIKE-----LKPSEQYKIKCGIEHFKALDe---------SIQFEV-ESDF 984  Methanosphaera stadtmana...
1_pfamImport             67 ETKSKhi----------gLGNEEDAKITCGNAHFISLKeqm-----inPARYMR-STNI 109 
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