6Y2P,5HY3


Conserved Protein Domain Family
RnlA_toxin_N

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pfam19417: RnlA_toxin_N (This model is not part of the current CDD release)
RNase LS, bacterial toxin N-terminal
RnlA_toxin is an RNase LS and a putative toxin of a bacterial toxin-antitoxin pair. Toxin-antitoxin systems consist of a stable toxin and an unstable antitoxin. In this case, a novel type II system, RnlA is the stable toxin that causes inhibition of cell growth and rapidly degrades T4 late mRNAs to prevent their expression, and this is neutralised by the activity of the unstable antitoxin RnlB. This entry represents the N-terminal domain composed of four-stranded twisted antiparallel beta-sheet and two alpha-helices.
Statistics
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PSSM-Id: 523661
Aligned: 20 rows
Threshold Bit Score: 57.698
Created: 20-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6Y2P_A         6 YKNLNLVRANIETESRQFIE-NKNYSIQSIGPMPGSr-A-GLRVVFTRPGVNlATVDIFYN---GDGSTTIQYLTGANrS 79  Escherichia col...
CDF00583      89 KISVYMDKDNLNSLIEECGTeLWKESFKMIDYSTVG--Q-AERLTYSVSGTQ-LKIDFFFR---KDGSVTIKSVGSQN-I 160
WP_117382103   3 YKGLQLNKAKINNTIQEYNP------DAVITITEKSp-V-FHQYHIELDGEPkAQLDIYYT---VNGKVTLNPVSTKNvD 71  Mucilaginibacte...
WP_069874948   5 FKKLHINQDLILSKIEQFLK-ENTITYEAPSLIPKDs-K-RHRAHIKYKDIE-FYLDFFFN---NDQTTTIDVTGGQNqH 77  Fusibacter sp. 3D3
GBG55487       2 SREKMLNREMIIPAIKKFCS-ENYRQYTVSDFIHKGd-Y-RHRVEIEADGAN-FFVDFHFR---GNGSTSIDISSGLHmD 74 
O82881         6 FKALNINIDKIESALTQ------------NGVTNYSsnV-KNERETHISGTY-KGIDFLIKlmpSGGNTTIGRASGQNnT 71  Escherichia col...
WP_004071776   3 YKNLNIDQKRLNELLKD----KIFFDLSEPPIVKKTkgA-SSNITIEKQGIQ-ASITIYFN---NNGTVSFSII-GKNpE 72  Desulfobacter p...
WP_121120895   4 FTDLNLDREKLKNCLEQFCK-KNEFHLEFVEDKP----N-KKTFKIIKSGLEpARLVFHLK---KSGATTIQINEGKNkK 74  Otariodibacter ...
Q6LR54         3 NNGLAMQTEKLSTYVDEFLTvHNAISMEARDITQ----S-KQTFKFIKTGQDvATVIVYIK---QGGLVTITYKTGKNhA 74  Photobacterium ...
5HY3_A         6 FKALNINIDKIESALTQ------------NGVTNYSs-NvKNERETHISGTY-KGIDFLIKlmpSGGNTTIGRASGQNnT 71  Escherichia col...
6Y2P_A        80 LGQELADHL 88  Escherichia coli K-12
CDF00583     161 TSKRLIEKI 169
WP_117382103  72 LADKIAQHV 80  Mucilaginibacter terrenus
WP_069874948  78 LKLILAYYL 86  Fusibacter sp. 3D3
GBG55487      75 KKKQIKDVV 83 
O82881        72 YFDEIALII 80  Escherichia coli O157:H7
WP_004071776  73 LSEDYIKFL 81  Desulfobacter postgatei
WP_121120895  75 LNCEIAEYI 83  Otariodibacter oris
Q6LR54        75 LGKVFHDFL 83  Photobacterium profundum
5HY3_A        72 YFDEIALII 80  Escherichia coli O157:H7
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