Conserved Protein Domain Family
DUF5939
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pfam19363: DUF5939 
Family of unknown function (DUF5939)
This presumed domain is functionally uncharacterized. This domain family is found in a wide variety of bacteria such as proteobacteria, spirochaetes, firmicutes and actinobacteria, and is approximately 280 amino acids in length. The family is found in to the N-terminus of pfam00211.
Links
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Statistics
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PSSM-Id: 497963
Aligned: 18 rows
Threshold Bit Score: 489.94
Created: 20-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
jgi:Mnod_0078   2 MHDSDALLDALRQAGDPEAVQALEQLIQHGADEELVRINALSFAGEHGLSQDAVISTLLHGARLGLFEMSWNILCSSCGG 81 
WP_034463532    1 MSEPQALFDVLRHSADPKAADAIERLVASGSDRALCRLNVLDFARANGLDEERAIAAFLHASRLGIFDMSWNLLCPGCGG 80  Afipia sp. P52-10
WP_091128176    1 MSEDRKLLAVLQQSADRTIVDHIERLIRDAPDHELNRINVLAFAAKHGLDEEASIAAFLHAARIGLFEMSWNVLCPGCGG 80  Microvirga gua...
SDR60732        1 MSEAEALFTVLRQSADAQAVAAIERMVKDAPDHALNRVNVLDVAAKEGLGEEQVIAAFLHAARLGLFEMSWNVLCPGCSG 80 
SDR60731        1 MSEAEPLFTTLRQSADAAAAAAIERLVRDAPDHELNKINALDLAAKEGLDEERVIAAFLHGGRLGLFEMSWDVVCRSCGG 80 
WP_008836395    1 MSETGNLLSILREAADAAAVDAIEAALERGPDRGLCRINALAFADKQALDEEKTVSAFLHASRIGLFDLSWNVLCPGCGG 80  Mesorhizobium ...
WP_091950907    1 MDDIQPLFGVLRQSVQPDIVDKIERLVREAPDRKLCRVNALAFAASERLDEEETINAFLHAAHLGIFEMSWNVLCPGCGG 80  Phyllobacteriu...
1_pfamImport    1 MSETQALFDVLRQSAAPAFADAIERHVRDAPDRKLGRINALAFAAEHGLDEEKTIAGFLHASRLGLFELSWNVLCPGCGG 80 
WP_056800190    1 MSDTRSLLDVLRHTVSADIADEIERLAATAPDRKLNRINVLAFAAERGLDEEKVIAGFLHASRLGLFEFSWNILCPGCGG 80  Bosea sp. Root381
WP_056316574    1 MSEAQSLFTMLRQIAQPAIVDAIERFVRDAPDRRLCRVNPLAFAAEHGLDEEQTINAFLHASQLGLFELSWNVLCPGCGG 80  unclassified R...

jgi:Mnod_0078  82 VLGANASLKSVRQDAYRCAFCALDTEPILDDAVEVSFAISPRIRRVAAHDPGSLAFWDYHRQIFFGTGVVFPEPpaFEDL 161
WP_034463532   81 VLEAGATLKCLEHDTYDCALCSAGYEPTLDEMVEVTFTVSPRVRKIIGHDPDALSFTEYCRQYFWGTGIDLPDN--LEQH 158 Afipia sp. P52-10
WP_091128176   81 VLNEGTSLKSLNQEEYSCALCAAGYEPTLDEMVEVTFTISPRIRKIAAHEPDKLPMHEYLRQIFWSSGVDLPDN--FEQL 158 Microvirga gua...
SDR60732       81 VLDANTTLKTLDRAEYSCALCACGYEPTLDEMVEVTFTVNPRLRKIAAHTPDELPAHEYYRQIFWSSGIDLPQD--FERL 158
SDR60731       81 VLNANATLKTLNKAEYSCAFCAALYETTLDNMVEVTFTVSPRVRKIAAHSPDTLSAAEYYRQVFWSSGTDLPAD--FERA 158
WP_008836395   81 VLDANTSLKTVLKDEYVCALCADGYSPTLDEMVEVTFTVSPRVRKIAAHDPDELPLAEYFRQIYWGSGVDLPEEs-FDEA 159 Mesorhizobium ...
WP_091950907   81 VLDANTSLKTVQSEEYTCALCAAGYEPTLDEMVEVTFTVSPRVRHIEAHDPHRLPTLEYFRQIYWGSGIELPEDd-FEAK 159 Phyllobacteriu...
1_pfamImport   81 VLDANTSLKTVQSEAYTCALCAAGYEPTLDEMIEVTFTVSPRVRHIEAHNPHELPAAEYFRQVYWGSGVDLPEDd-YEAK 159
WP_056800190   81 VLDAGASLKHVHSEAYTCALCAAGYEPSLDELVEVTFTVSPKLRRIEAHHPDQLPAAEYFRQIYWSSGVDLPEDd-YEAM 159 Bosea sp. Root381
WP_056316574   81 VLDANTSLRTVQSDTYSCALCAAGYEPTLDEMVEVTFTISPRIRHIEAHNPEQLSPTEYFRQIYWGSGIELPEEg-FEAK 159 unclassified R...

jgi:Mnod_0078 162 ARLATLEAVELQAGERMILALQIPAGSLILFDPVTHTAQVLDVAGEPAQQRQELSLVFDDIRPAVGHVDLKPGQLRLTLE 241
WP_034463532  159 LDEFTIEALELPAGEKAIVSIQLPAEFVIVFDPVTHATQFIDVQGEPTRERQTLPLVFNDVKAQTGTVTMHPGPLRIAFD 238 Afipia sp. P52-10
WP_091128176  159 LDEIVLDAVELPPGERVILSLQLPANFVIVFDPVTHAAQYIGVQGEPTRERQNLSLILNELHAENSTLKMHPGPLRLQLE 238 Microvirga gua...
SDR60732      159 IDEVTLEGIELPAGERAVLSLQLPSGFLIVFDPVTHAAQFIEVKGEPTRERQNLSLVFNKVRAPTGTIELQPGPLRLALE 238
SDR60731      159 LQEVTLEAIELPPGERAILSVQLPAGRSIVFDPVTHAAQFLDAKGEPSRERQSVSMLFNNVHGLTPAMDMRPGPLRLTLE 238
WP_008836395  160 VEGFVLEDIELPPGEKAIVSIQLPPEFIIVFEPVTHSAQFIDVKGEPTRERQNLSLTFDKDHVHSQTLEMRPGPLRIAFE 239 Mesorhizobium ...
WP_091950907  160 VDGFMLEELELPPSEKAVISLQLPADFVIVFEPVTHAAQFLDVKGEPTKERQSLSLIFDRTHRHHETLTLRPGPLRIALE 239 Phyllobacteriu...
1_pfamImport  160 AEEFILETLELPPGEKAVIALQLPAEFIIIFEPVTHAAQFIDVSGEPTKERRNLSLVFDRTHRHNETISMQPGPLRIQVE 239
WP_056800190  160 LDEFIVEALELPAGEKAVISIQIAESFLIVFEPVTHAAQFIEVKGEPTKERQALSLVFDRSHRHHETLVMHPGALRIAVE 239 Bosea sp. Root381
WP_056316574  160 VDEFVLEALELPPGEKAVISLQLPAEFVIIFEPVTHAAQFIDVKGSPTRERQNLTMIFDRGFRHSETLEMQPGPLRLSVE 239 unclassified R...

jgi:Mnod_0078 242 NRSEERVLPGIFIAGEALNTLIGGRRPFLTAKRLLSNQAFRD 283
WP_034463532  239 NQSGRRVLPGIWIANDALHQMLGRRKPFLTAKRLLTNQTFRD 280 Afipia sp. P52-10
WP_091128176  239 NHTKRRTLPAVWIADDKLHGLMEHRRPFLTAKRLLTNQTFRD 280 Microvirga guangxiensis
SDR60732      239 NRTDLRALPAVWVADDKLHELMGRRKPVLTAKRLLTNQTFRD 280
SDR60731      239 NRTEMRVLPAVWIESPALDRLLERSKPVLTAKRLLTNQTFRD 280
WP_008836395  240 NRTDRRTLPTICIAGDVLHGLLGKRRPFVTAKRLLTNQTFRD 281 Mesorhizobium alhagi
WP_091950907  240 NHTDVRVLPSVCIANEALHNLLGRRRPFLTAKRLLTNQTFRD 281 Phyllobacterium sp. YR620
1_pfamImport  240 NHAEVRTLPTVCVAGEALHALLGRRRPFLTAKRLLSNQTFRD 281
WP_056800190  240 SHVDVRTLPSVCVANDALHQMLGRRRPFLTAKRVLSNQTFRD 281 Bosea sp. Root381
WP_056316574  240 NHTEVRTLPSVCVANEALHDLLGRRRPFLTAKRLLSNQTFRD 281 unclassified Rhizobium
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