Conserved Protein Domain Family
DUF5935
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pfam19358: DUF5935 
Family of unknown function (DUF5935)
This presumed domain is functionally uncharacterized, but is is found in O-antigen polymerase proteins. This domain family is mainly found in proteobacteria, and is approximately 190 amino acids in length. The family is found in association with pfam04932.
Links
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Statistics
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PSSM-Id: 497959
Aligned: 49 rows
Threshold Bit Score: 179.314
Created: 20-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
WP_035013525   2 ITDLFYTIIICLMIWFGWSRPCVALAAVLWVDTVKPQNTSFSFLSGKPLSLILTAFFFFTLIVNAKKLKRvDNKLFYILF 81  Catenovulum aga...
WP_056618286   1 MRDLAFIAFLAALLATGFRRPFLFVLAYAYIDIVSPQRLTYLLLNSVPISMLAVALAVAGWLAFDDKKDV-RVAPRQFLI 79  Sphingomonas sp...
WP_055780966   1 MRDLVFVAFLAAFFACGFKRPFIFVLSYVYIDIVSPQRLTYVLLNSVPISLIAVGLAVGGWVLTDKKADS-RVAPRQLLI 79  Sphingomonas sp...
WP_055841443   1 MRDLAFIAFLAAFMGMGLRRPFLLVLVYVYIDIVAPQRLTYYLLNAIPISLVSVVLAVGAFALADDKRDS-RFAPRQGMI 79  Sphingomonas sp...
WP_055755361   1 MRDLAFIAFLVALFGMGLHRPFVFVLTYVYIDIVAPQRLTYMLLNSIQISLIAAACAIGAWVVVDDKRDT-RIAPRQGLM 79  unclassified Sp...
WP_008071064   1 MTNLFLTLFVMAFFAAGFARPFLFVLAYAYIDIVAPQKISWGLLQAIPISLLAFILMTIAWAMREDKRGV-HFSLRQSLM 79  Novosphingobium...
WP_022675638   1 MLDLFFTAFCLAFLGAGLKRPFLFVMAYAYIDIVAPQKVSWGFLTHIPISLIAFSCALLGWIVAEDKNGI-RISPRQFVL 79  unclassified No...
WP_008603606   1 MRDIFLVLILLAFVISSFRVPYFMALGYLWVDFLQPQRMGYYLFNQLPVAMILGAGAFLAYILFDRERRL-RLDTLQVLV 79  Pacificimonas f...
WP_014109526   1 MTDFLILGVFILFTIFGLIRPYISFAGYLWVNTMAPQTIVFGFLAGKSLSLYMALVCFISLVLGFRKLSVpHQKAVPFFL 80  Glaciecola nitr...
WP_093221815   1 MRDLVFVAFLGAFFLAGLRKPFIFILAYIYIDIVSPQRLTYLLLNAMPISLIAFCAAVLSWALIDDKRDV-RIAPRQIII 79  Sphingomonas sp...

WP_035013525  82 LAFMVWVTLSHLNAQHPTMSAIKYDVVIKTLFLMFFIPFTISSRKDFEYVLSILFMASTLFITIAGVKSAM-GGGGYGVS 160 Catenovulum aga...
WP_056618286  80 VLLLGYCLYTTLHADFPIEAKDKWEWVWKALAFAAFLPLTLRTRLRIESLLLFMVLSAASIIIVGGIKTLG-SGGGYGEL 158 Sphingomonas sp...
WP_055780966  80 VLLLVYCYITTLTADFPVEARDKWDWVWKALAFAAFLPLTLRTRLRIESLLLFMILAASSIIMVGGIKTIAsGGGGYGQL 159 Sphingomonas sp...
WP_055841443  80 VLLLVYCWLTTMAADFPVEAQDKWGWVWKALAFAAFLPSTLRTRLRIEALLLFMVVSAASIIIVGGVKTLV-SGGGYGQL 158 Sphingomonas sp...
WP_055755361  80 LALLLYCLWTTKGADFPVDAQFKWEWVWKALAFAIFLPLTLRTRLRIESLLLFMVLSAASIIIVGGIKTLG-SGGGYGEL 158 unclassified Sp...
WP_008071064  80 LVLLLYCGMTTLGADFPDEAAAKWSWVWKALVFAMFLPMTLRTRLRIEALTLVMVLGVAVITIDGGLKTLT-GGGGYGEL 158 Novosphingobium...
WP_022675638  80 LLLLVYCGLTTRTADFPVEAAAKWDWVWKALIFALFLPLTLRTRLRIEALTLTMVLSVGVIVIGGGIKTLS-SGGGYGEL 158 unclassified No...
WP_008603606  80 LLLVGWATLATF-GWGEVDGSAKWDWVSKALLFSVFLPFVLTNRVRIEAALAVMIFSMSAITISGGLKTLM-GGGGYGTL 157 Pacificimonas f...
WP_014109526  81 VLFAVWITLSTYNAQFPFIAWVVWDTTFKTVLMAFFLLFVIQTRKQLEFMILVLISSLSFYIISAGAKTLT-GGGGYGNT 159 Glaciecola nitr...
WP_093221815  80 LLLLLYCGITTRNADFPLEALDKWDWVWKALVFAAFLPLTLRTRLRIESLLLFMVLSASSIIIVGGIKTVV-SGGGYGSL 158 Sphingomonas sp...

WP_035013525 161 LIGlQGSGFMYSEGSMLATLAVCVIPLALYLANYSY 196 Catenovulum agarivorans
WP_056618286 159 NLM-VTNNSGLYEGSTISTVAIAIIPLILWFTRYGT 193 Sphingomonas sp. Root241
WP_055780966 160 DLM-VANNSGLYEGSTISTVAIAIIPLILWFSRYGT 194 Sphingomonas sp. Leaf357
WP_055841443 159 NLM-VDNNSGLYEGSTISTVAVAIVPVIFWLMKYGT 193 Sphingomonas sp. Leaf343
WP_055755361 159 NLM-VSNNAGLYEGSTISTVAIAIIPLILWFSKYGT 193 unclassified Sphingomonas
WP_008071064 159 KLL-VNDNTGLYEGSIISTVAICLIPIALWLARFGT 193 Novosphingobium nitrogenifigens
WP_022675638 159 RLL-VNDNTGLYEGSIISTVAMCVIPLALWLANHGT 193 unclassified Novosphingobium
WP_008603606 158 SLL-VSNNTGLYEGSILSTVGCATIPLVWWLYKNNS 192 Pacificimonas flava
WP_014109526 160 LIV-GGGNSGMAESSTLATFAVVAMPIIFFLKKHIT 194 Glaciecola nitratireducens
WP_093221815 159 NLM-VSNNSGLYEGSIISTVAVAIVPLVLWFSNHGT 193 Sphingomonas sp. NFR15
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