Conserved Protein Domain Family
DUF5934

?
pfam19357: DUF5934 
Family of unknown function (DUF5934)
This presumed domain found in type IV secretion system proteins is functionally uncharacterized. This domain family is found in proteobacteria, and is approximately 170 amino acids in length. The family is found in association with pfam11130. There are two conserved sequence motifs: GWDL and QGEY.
Statistics
?
PSSM-Id: 497958
Aligned: 11 rows
Threshold Bit Score: 328.202
Created: 20-Feb-2025
Updated: 28-Apr-2025
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
OAO00956               286 IGDLFTDKLRLPCPVATTLCLTYPDATTSANRAAYKYMRTSSLSDSKSSRFLPQLKDQSREWEDVQEQLRQGNKLVKAFY 365
CCW16905               257 IGDLFTDKLRMPCPVATVLCLQYPDEQASASKAGYKFMRTTSLADSKSARFLPQLREQSREWQYVQDELRQGRKLVRCFY 336
WP_021244651           288 IGDMFADKLRMPCPVSTNLCIDFPDAEAASSKAGFKYMRTTSLADSKSARFLPQLKEQSREWRHVNDEMKQGHKLVRVFH 367 Sphin...
WP_054435020           285 IGDMFADKLRMPCPVSTNLCLDFPDAESEGLRASRKFMRTTSLADSKSARMLPQLKDQSAEWKFVKDELRQGRKLVQAFF 364 uncla...
WP_037554269           286 IGDPYFDKLRMPCPVATMLTITYPDEQAATSRAAFKFMRTTSLANSQSAKFTPQIRDQSREWEYVQDQLRQGQKLVRVFY 365 Sphin...
WP_067614849           283 IGDVFNPKLCLPCPVLQSISGKIPAADVSEAKAGWKFTRTTSLADGKAAKLVPSLKTQSAEWQHVQQQVRLGQKLVQIYY 362 Novos...
WP_007685329           285 IGDIFNPKLCLPCPTLQSVCGVTPGVESSESKAGRKFVRTQSLSEGQGVKLVPKLKDQAAEWRAVQERVKSGEKLIRCYY 364 Novos...
PRJNA241282:CP97_14960 286 IGDIFNPKLNLPCPVLQTVCGVIPGQESSESKAGYKFARTSSLAEGKGVKLVPKLRTEAAEWQFIQDRVKQGEKLVSCYY 365
WP_096342258           290 IGDLFTDKLRYPCPAATILCLVYPDQEAASTRAGMKFLRTTSLSEGKSARYVPKLREQAAEWREVQAQLQEGRRLVRAFY 369 Sphin...
Q2G6C2                 290 IGDLFTDKLRFPCPAATMLCLVYPDQEAASAKAGFKFMRTTSLAGTRSARFLPRIGEQAAEWQHVQAELQEGRRLVRVFY 369 Novos...
Q2N5I4                 290 IGDMFADKLRFPCPTATMLCLVYPDQEAASARAGFKFMRTTSLSQTKSASFLPKLAEQSAEWRHVQAELQAGKKLVKLFY 369 Eryth...
OAO00956               366 GVTAFSPKGKGDVHERTLKSMYKACGWDLHSERYMQMVGFLACLPMTLGSGLISDLGRMKRMRTMLTTTAANLAPFQGEY 445
CCW16905               337 SLTSFSPKGQGDAHERIVKSVYRAAGWDLHDDRYLQIMGLLCAMPITLADGLARDLERMKRMRTMLTTTACNLAPLQGEY 416
WP_021244651           368 SVTAFSPLGKGDAHERALKSVYRAAGWDLLADRYLQIMGLLCAMPMTMANGLSKDLERMKRMRTMLTTTAANLAPLQGEY 447 Sphin...
WP_054435020           365 SVTSFSPKGKGDANERILKSVYRAAGWDLLDDRYLQIQGLLAAMPMTMANGLSFDLRNMKRLRTVLTTTAASLAPLQGEY 444 uncla...
WP_037554269           366 SVMSVSPYGEGDRHERNLKAVYKAAGWELQDERYLQMAGLISVMPLTMANGLAKDFERLKRFRTMLTTTVANIAPLQGEY 445 Sphin...
WP_067614849           363 SVTMVSPAGRGDVNERTLKAIYKAAGWDLIDETYLQLGGLMASFPLMLADGLSIDLARMRRFRTVLSANVASLAPVQGEY 442 Novos...
WP_007685329           365 SVSIIAPRGTAETAERAIKGLYKAAGWDLIDETHIQLPAFMSHFPLMVADGLQSDLERMKRFRTMLSSNVAAIAPLQGEY 444 Novos...
PRJNA241282:CP97_14960 366 AVSILAPKGRGEPCERTLKALYKASGWDLIDETHIQLPAFMAHFPLMLADGLDSDYKRMKRLRTMRSTNVAAIAPIQGEY 445
WP_096342258           370 GVTTFSPAGDGDRNERMVKSLYKSAGWDLADERFLQVQGLLAAMPLTLADGLAADLERCRRMRTMLSTTAANIAPVQGEY 449 Sphin...
Q2G6C2                 370 GVTAYSPLGQGDRHERAIKSIYKAAGWDLTDERYLQIQGLLAAMPLTLADGLGADMERLKRFKTVLSTTAANIAPMQGEY 449 Novos...
Q2N5I4                 370 GLTSISPLGEGDAHERVIKAIYKAAGWDLADERFLQLQGLVAAFPLSLADGLAHDMARLKRLKTMLSTTAAHIAPMQGEY 449 Eryth...
OAO00956               446 KGSNIPHLLLVG 457
CCW16905               417 LGGPIPHLLLVG 428
WP_021244651           448 LGGPIPHLLLIG 459 Sphingobium baderi
WP_054435020           445 LGGNNPHMMLIG 456 unclassified Novosphingobium
WP_037554269           446 NGGPIPHLLLLG 457 Sphingopyxis
WP_067614849           443 NGGHIPHLLFIG 454 Novosphingobium sp. FSW06-99
WP_007685329           445 VGGHIPHVLFVG 456 Novosphingobium sp. AP12
PRJNA241282:CP97_14960 446 VGGNIPHLLFIG 457
WP_096342258           450 LGGAVPHLLFLG 461 Sphingomonas spermidinifaciens
Q2G6C2                 450 LGSAHPHLLFIG 461 Novosphingobium aromaticivorans DSM 12444
Q2N5I4                 450 LGGAIPHLLLVG 461 Erythrobacter litoralis HTCC2594
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap