6R22


Conserved Protein Domain Family
Ty3_capsid

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pfam19259: Ty3_capsid (This model is not part of the current CDD release)
Ty3 transposon capsid-like protein
This entry corresponds to the capsid protein found in the Ty3 transposons of yeast as well as other transposable elements.
Statistics
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PSSM-Id: 523590
Aligned: 6 rows
Threshold Bit Score: 263.178
Created: 20-Feb-2025
Updated: 25-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6R22_A        16 LPVECLPNFPIQPSLTFRG-RNDSHKLKNFISEImLNMSMISWPNDASRIVYCRRHLLNPAAQWANDFVQEQGILEITFD 94  Saccharomyces c...
Q6BV11        44 IHRETHTFLMHATIGPYSG-SKNPSRIKYFISEI-LRISERFSLNDTQLITLSGRNMTGRAEEWFHAYRCSAKCRDETFQ 121 Debaryomyces ha...
EJT43768      13 LPVECLPNFPIQPALLFRG-KNDSHKLKNFISEImLNMSMIPWPNEASRIVYCRRHLLNPAAQWANDFVQEQGILEITFD 91 
CCH58584      12 GHSETKPIDTKVKLMTFDG-KEDVLSLPKFVATLkLQMVTQQAITDAEKIAFFAQHLTGNAVTWALNWVDE-PPTDATWE 89 
XP_001644706  13 AETTSTPQYMYRVTLPFHG-THDVLKINSFLSTMrIQFEFHDIP-EKKRIHFVANHFESLASLWFHSWRED--NKDASYE 88 
XP_004179704   2 SSPVAVMPAEIKVPHDFTGeRKDIIKLHSFLQSLeVQFVVKRVTNDYERICHLAANLYGPALDWFMTFSGNHDVSEMAFD 81 
6R22_A        95 TFIQGLYQHFYKPPDINKIFNAITQLSEAKlGIERLNQRFRKIWDRMPPDFMTEKAAIMTYTRLLTKETYNIVRMHKPET 174 Saccharomyces c...
Q6BV11       122 QFTHHLIHHFAGANDKQQQVEDIVNLKQNN-RVIEYSSHFESFLQKLPKDFFTEEQKVIFYISGLKPKIKIEVQHEHPLT 200 Debaryomyces ha...
EJT43768      92 TFIQGLYQHFYKPPDINKIFKTINQLSEAKlGIERLNKKFKMIWDRMPPDFMTEKAAIMTYTRLLTKETYNIVIMHKPKT 171
CCH58584      90 NFIKDFESHYTSKIDIHKLLNFIHNINEASiGIERYNASYRRLIALLPKDLWSEKAILAQYARNLSPTTYERIAAAEPST 169
XP_001644706  89 TFVKAFKKRFERIPDPEQLFNDMERLQPMEmGSDAFITEFNRLYRLLPPGSLSLVAAKHFYLKNMDRSIAIAIRLANPQT 168
XP_004179704  82 AFKEAFKQAFQGKFDSYDVIQKLSSLTQKD-KIEAYVSTFNRYRKLLPPRSLSNDVLINLFIKGLKPNTRKDLRLRTVSS 160
6R22_A       175 LKDAMEEAY--QTTALTERFFPGFE------LDADGDTII 206 Saccharomyces cerevisiae S288C
Q6BV11       201 LIEAIEISQ--VYENIIKVGSFGNNqvkktvELDPQRKVE 238 Debaryomyces hansenii
EJT43768     172 LRGAMEEAY--QTTALTERFFPEFE------LDADGDTII 203
CCH58584     170 LKKAMVIAY--ETIPIQSREFSTGTqqsfnlPMGTQQSRM 207
XP_001644706 169 FEELYNITY--DYIPYKERTSYTPTrnenakSTDDILATT 206
XP_004179704 161 FYEATQLAIraEHCCYYPGISPLLDdnstptVDADGDVIM 200
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