Conserved Protein Domain Family
DUF5899

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pfam19251: DUF5899 
Minor capsid protein P2, DUF5899
This is a domain of unknown function found in Minor capsid protein P2 from Paramecium bursaria Chlorella virus 1 and related sequences from Mimiviridae and Phycodnaviridae. Minor capsid protein P2 is one of the minor capsid proteins that constitute a network internal to the major capsid proteins and outside the lipid membrane. The minor capsid proteins glue and stabilize the capsomers. It also acts as a molecular tape measure protein that determines the size of the viral capsid.
Statistics
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PSSM-Id: 497867
Aligned: 7 rows
Threshold Bit Score: 169.227
Created: 20-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
YP_009174490                  100 QPVYDLYGRQNITNKMNNFPPVER-IRVGPGLGVGPDVAATGGFQQFFRALPNNINEERLTTLDGRPGPSNPVVKNgGAG 178
YP_004061516                   87 GEVLSMRDRMYDAGRMNNLSPIEK-QLVGPGLGVGPEVPAFGGNQQLFRVNPENVGAYRLTTLPGRSGPAFDAKGG-RRG 164
YP_009465804                   74 GEMLEMRNRMYDTGRMGNVSPVER-QLVGPGLGLDANTPAMGGYQQLFRVMPENVGAYRLTTLRGGAGPAFDHTGG-RAS 151
REF_CAMERA-phage:MPVG_00129T0  73 QELLEMRGRLYDQGRMNNLSPIEQ-KLVGPGLGVGTNVESAGGYQQLFRVNPVNTGAYRLTTLPGRSGPAVDIKGG-RRA 150
YP_009174362                  101 QPVYDMVNREYVTNKMNNLSPLEQpKNVGPGLGLGAGVAAGGGFHDYFRALPTNINEEKLTTIEGRDGPPNPVVKS-GLP 179
YP_009174826                   98 QPVYDLSNRQNITNKMNNLPPIER-MNVGPGLGVDPSVPATGGFQQFFRVLPNNINEERLTTLPGGKGPSDAFVKN-GLT 175
1_pfamImport                    1 QEILNMRNRMYDTGRMNNLSPIEK-QMVGPGLGVGADTPASGGYQQLFRVNPINVGEYRLTTLPGRSGPAADVTGG-RST 78 
YP_009174490                  179 GIGEMTHQAKATKAWN--RPPAKNSAQQAQGGGMRgmegRPDQIKTRRTTIRQETGFRGDTLE 239
YP_004061516                  165 IVGEVSHNRPEKTAFLhgRLPPVAGRAQGMTGRTP----RAEHERTKRTTNRSETGSRTDTLN 223
YP_009465804                  152 QPAIVQNNRPEKTAFLpdRLPPTAGRA-AVSASVV----RSEHEKTKRTTNRSQTGMRTDGLD 209
REF_CAMERA-phage:MPVG_00129T0 151 EIGELTHNQPEKTAYLpeRRPPVFGRAQGMSGTVP----RASHQKAMRNTNRAQTGHRTDGLD 209
YP_009174362                  180 LIGSITKEAKETKTWM--REPAQ-GGGQGQGGAIVgaegRPDFLKTRRTTIRQETGLRADTLA 239
YP_009174826                  176 VMGEVTHQAKDTKTWR--RAPVQ-SRGQGQGGALTapegRPDQIKTRRTTIRQETGQRTDTLE 235
1_pfamImport                   79 LVGQLTHNKPETTAHLpsRLPPTAGRAQGMSGAIP----RASHQKTMRTTNRSETGHRADGLG 137
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