6BZG


Conserved Protein Domain Family
Spo16_N

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pfam19225: Spo16_N (This model is not part of the current CDD release)
Spo16 protein, N-terminal
This entry represents proteins related to yeast Spo16. Spo16 forms a complex with Zip2 and Zip4. Zip2 and Spo16, form a meiosis-specific XPF-ERCC1-like complex. The recombinant Zip2 XPF domain together with Spo16 preferentially binds branched DNA structures, such as D loops and HJs. The Spo16 protein contains a nuclease-like domain similar to that in ERCC1, represented in this entry, and a C-terminal HHH motif.
Statistics
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PSSM-Id: 523582
Aligned: 13 rows
Threshold Bit Score: 87.3424
Created: 20-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6BZG_A        22 VKCVTVNTSRLisq--------lnEELQDEESGVNFIVTQLQLLINNVYEKIQKSPGvpa-hrsLMINLNFTRLKFSIAY 92  brewer's yeast
Q6FR09        15 ILIVECTCQEF-------------PKGYPDEELKMMAKKELKKLLDKIRMQDLSLLQkd----dTLLIICFDSTDITIEG 77  [Candida] glabrata
P17122        23 VKCVTVNTSRLisq--------lnEELQDEESGVNFIVTQLQLLINNVYEKIQKSPGvpa-hrsLMINLNFTRLKFSIAY 93  Saccharomyces c...
XP_056088249  23 VQCVTVDTSRLvsq--------ldKELQNEESGVDLAVKQLQLLIENVYNKIRRDSGvps-drsLVINLNFTNLKFSVAY 93 
SMN20763      21 TIVIDINNSNLvlmieqsvnngslDSDTKNKEIREMIQNELMIVLDILAKEIITERN-------VNINISLFKKGVPLWY 93 
Q6CN33        18 VVVLDVLETEKa-----------cNRVSHYEDKTTIARREIEDVFDQIIVEFSDVQT---------FNFDLKNMNYPLWF 77  Kluyveromyces l...
XP_003676096  17 ILVVDVNTSLFitnvk----sfptQTASSDSELLHYIAKELGALLEEIENEFLKGKAtv----fQKINLNFSEMKYPFHF 88 
XP_022464570  16 ILVVSISRKRLwedv------dgiTGDNQIDRRDSLIISKLEQLLQKLQGEIMSSTV-------AGVNLEIDTLVYPLCY 82 
XP_003957501  19 VVSYEIDTSRVllti-----nsdkQTFNSADRVNQYLTKELVQILKQVYREYASTAL--------TINLNFSKLQYPLHY 85 
XP_003682696  21 IIILDVSSDEFl------------QHLQDAADVNEQLMSALKELLMTLKVKYAGSKD-------AVLNLNISQLKYPLYH 81 
XP_003686748  16 LCIVTIDCSKLfe----------nQNNVNTKTFQETLLSELIELVIYLISKNVVPKQsk---ykQLISLNFKKLFIPLSL 82 
XP_001645801  16 MVVYEVDCHNMm------------NKGLGEEEVQEWIVLELARLIREKVEGMDDARI---------VNISLYESYYPLYF 74 
XP_004179960  16 IYVFNIDNSKLlqdidslqsdqekQENDVKANISELVFEVLTGLLINIESRLEMKYGrlpdtdnFVINLNLQELRFSYSV 95 
6BZG_A        93 WDILLERSLDLINGPskTg----aRYFI---TEV-TP-VDRSRYVENNQYFLAFKANQRLTRN 146 brewer's yeast
Q6FR09        78 WEVIVEELKEKSTLW--Ch----rEIFIcskSET-TKsLTMRKFIENNPIYTSFKHNLKNARP 133 [Candida] glabrata
P17122        94 WDILLERSLDLINGP--Skt--gaRYFI---TEV-TP-VDRSRYVENNQYFLAFKANQRLTRN 147 Saccharomyces cerevisiae S288C
XP_056088249  94 WDILLERSLDLMANE--Apkt-naRYFI---TEA-TP-MERDRYAETNLNFQTFKVNQRRVRN 148
SMN20763      94 WNSILNKVLSENFIS--Lfd--hcNFII---TLQ-SN-ADRQYYQDNSSMLNKFQAAITNEEV 147
Q6CN33        78 YDRIFFEVTRKEPI----------QYFV---SERpSDiSERIQFPLQSEPFQSVLQENQTTRN 127 Kluyveromyces lactis
XP_003676096  89 WDELIFLDTRKLTNN--P------QVYI---TEQ-SP-FDRQEYFKTNYFITRFRKQICESAS 138
XP_022464570  83 WEQLLSCAFLQFGRE--Ts----sKVFV---TQR-TT-QNRQRFSQNNKALLSWQVDLLTEET 134
XP_003957501  86 WEQLLYYILLSFSLP--N------KIYI---TEQ-TK-QDRQRYVNQNKNYYSFVERITVGAV 135
XP_003682696  82 WEEALYLATEEVDFP--Q------EIYI---TMQ-GE-TNRNKYSEDNRMLLKFIKTLEIGKR 131
XP_003686748  83 WNDILSIALERVNLS--Na----yDIFI---TES-TT-QNKEKYISKNSRLMNFINSNKTEAD 134
XP_001645801  75 WDYFLQMAIDELAVS--GggnlrvRVFV---SEG-KN-GDKKRYIHENSTLYNCLKSMATADE 130
XP_004179960  96 WDQFISLVTSELQFK--H------HVYI---TKH-DNvMDRQIYLNTSSIFRNFRSHFNDNDK 146
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