Conserved Protein Domain Family
P8_CR

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pfam19065: P8_CR (This model is not part of the current CDD release)
Minor capsid protein P8 central region
This entry represents the central region of the minor capsid protein P8 found in PBCV-1 and related viruses. The central region of P8 folds into a wedge-shaped structure that consists of three short alpha-helices wrapped around a long alpha-helix. P8 and other minor capsid proteins contribute to the stability of the pentasymmetrons of the viral capsid.
Statistics
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PSSM-Id: 523544
Aligned: 15 rows
Threshold Bit Score: 132.408
Created: 20-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
YP_010778403                   56 GG-MQIENTPVSLLFFSDENVKRIQKLLKRGIADMSKgkFILEEdQDENDLFIVMRAVFLDSG-----LNLPTHIVSQVK 129
YP_009174334                    1 MA-SKYLPSPLADAFFSDFNKETIQDQIASAIKDKTG--VELQR-QSYSDLDALMKRVYVNMK-----KDTNSNVRQQVD 71 
YP_009174795                    1 MS-TRYLPTPLSDAFFSDFNRETIHGDIIQSIKSKTG--YTINK-QNDADLQALMKRVYVNLM-----ADPYVDVRGQVA 71 
YP_009174517                    1 MA-TRQWNNPLSDAFFSEFNRETIHQGIIRAINQRTG--YTIDK-QSDADLQALMKRVYVNLM-----TDPYVDVRGQVG 71 
YP_004061561                    8 NT-LKQCPTPLNTLFFSEFNMNLLQRGIRQSFRDQTG--VAIDY-QNPSDLYSIMRVVFINNS-----GDPNANVQEQVK 78 
REF_CAMERA-phage:MPVG_00097T0   4 KS-IQQCPTPLNTLFFSDFNLSLLQKAIRQSFKNKTG--ISIDR-QNPDDLYAIMRVVFINNS-----GDPNIGVQTQVK 74 
YP_003969964                   44 VHeKSCDSATLSQIFYSDQNIELINKQIILTIFKKTNgkIRIPN-QSYNDLKVVMRWVYINYA-----RNLPFKIKEQII 117
REF_VBC:glt_00530              42 GN---NTKTKLSEIFFSPENINLLQKQIIHNVFFISNgeYLIEK-QNEQDLKVVMRSIFLQHA-----KHLPNELNKQIK 112
YP_010783591                   17 VApPRLEKTPVSAVFFHPRNIQCLHNSIRYRVYKKTG--KVIDR-QGDQQLYVLMSSVYQDSQdptleSGLSGSVDDIIR 93 
1_pfamImport                    1 LA-GTFERTSLSDAYFSLANIQIIQNALRKGVYDKSGgkIMVDN-QPQDQIVSVMRSMYYQHS-----KNLPNNIPQQIS 73 
YP_010778403                  130 ELNKKTVEYILPDMYTNVKQAYGYLQEINNPRKIMSLPLNVNk-----TQRGDLPSVTS 183
YP_009174334                   72 DMNGRVTEEATGTISTGLLQQIVYLRDISRNAVPLEVPVSTS------TYGNKIPSNFK 124
YP_009174795                   72 NMNKRVVQEATQTISTGVLQQLMYIKDISQNPVPLAAPVSTS------TYGNKIPDNTK 124
YP_009174517                   72 RMNDAVIEEATGTVSTGMLQQLLFMRDISSNPVPLQAPVSTS------TYGNKLGSRPP 124
YP_004061561                   79 YMNGIVIKTASGQIQTGVSQYMGYVHDIDTLAVPIDRPVNTT------TYGKKFGKSEQ 131
REF_CAMERA-phage:MPVG_00097T0  75 RMNEIVIKTALAQIQTGVAQYIGYIQDIDTTARPMDLPVNTS------TMGKKLPKSTK 127
YP_003969964                  118 NLNNYVVCELVPNLISASNQYLDYLRDIEKPLEPLPPPVNVSk-----D--RTLPSISE 169
REF_VBC:glt_00530             113 ELNNLVVDEVTPDIVSEIKSYFGYLERAFGKFEPMDRPQNVSn-----SGTKTLPSITN 166
YP_010783591                   94 KLNERVLYKAVNEILNAMQYYQFYMNDIST---PVPTPLPRSefadqrTGLKTLELPIG 149
1_pfamImport                   74 DLNEHVKKFCINSVYGEAVAYLKYKEDSSKMYEPMAAPIYAN------KQEKTLELKPW 126
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