6S5W


Conserved Protein Domain Family
RibLong

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pfam18957: RibLong (This model is not part of the current CDD release)
Long Rib domain
This entry represents the Long Rib domain that is closely related to the pfam08428 Rib domain but has a conserved insertion. These domains are found in bacterial cell surface proteins.
Statistics
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PSSM-Id: 523499
Aligned: 37 rows
Threshold Bit Score: 59.6294
Created: 20-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6S5W_A          8 ADDHNPKY-EDVDVKPG------------ETNKVTPTNT----DKDg---nPaniPDG-TKFEKd-PDAPs--WVEVDPN 63   Lactobacillus...
8_pfamImport    1 AETNDPSY-QPTTVVAG------------SAASVPAPLNs--nGSL-----P---PTG-STFTAg-PDAPd--WVKVNSD 53  
9_pfamImport    1 ASTYQPTYgAPTTVKAG------------ETATVSAPNWgd---------nK---PNGdVKFTAg-DTSPs--WAAVNPD 53  
WP_006546923 1927 AEKHQPVY-ADQSVTRGvypetlgnteipAGTVTKAGAAgqapSAAadtdpL---PKG-IVYTLg-EDAPt--WAHVNPE 1998 Gleimia coleo...
WP_052205667  150 ATNYAVSY-DPLTVKEG------------ESKVAANKAKt-----------L---PKG-TMFSV--VFAPeqfNVSVNNQ 199  Corynebacteri...
1_pfamImport    1 ANKYAPAYpSEVQVTAG------------ENKQVKLEGDt----------dL---PEG-TSFHApkSSDPtklDFAVEEK 54  
Q5FIM8        960 SNKYTPVY-SEGVGEAG------------KDFNVDSPTFt--dEDGnkvttP---PVT--VFEKg-EGAPd--WVKVDPN 1016 Lactobacillus...
WP_006307837 1123 AESYQPEY-TEAEGKAG------------TEATVTAPNFk--dAKGqe-ttK---PVG-VEFTIg-KDAPt--GATVHKT 1179 Facklamia lan...
WP_067977995  892 AAKYTPAY-AETAGEVG------------KEAKSAAPTFt--dKDGka--aT---PKV-NSYKLg-EGAPa--GATIDEA 947  Aerococcus ur...
WP_075732346 1175 AEDHAPSY-TPASVRVG------------RQTETFTPIFdltsTDDveqrpA---PFG-TKFEV--TGVTagyKATVGSN 1235 Corynebacteri...
6S5W_A         64 tGELTVAPPEGTPSGGH-EIKVKVTYPDGSTDEVPVTVKVS 103  Lactobacillus acidophilus
8_pfamImport   54 -GSLDFTPPKGTAAGEY-TVPVVVTYPDGSKETITTTINVT 92  
9_pfamImport   54 -GSIDVKPGDNVPAGTY-IVPVVVTYPDGTTEIVNVPVIVE 92  
WP_006546923 1999 tGVITVFPGADVPAGDV-QVPVKATYPDKSQDVLNAVVKVA 2038 Gleimia coleocanis
WP_052205667  200 -GHVTVTPGSKVGAGSTaTARIKVTYPDTSVAYTDLKITVS 239  Corynebacterium riegelii
1_pfamImport   55 tGLIKIYPSASLGDSSSvTIPVTVHYPDNSTDEINVKVVVK 95  
Q5FIM8       1017 tGALTGTVPEGTT-GDV-VIPVKVTYQDGSSEVVNATVKVT 1055 Lactobacillus acidophilus
WP_006307837 1180 tGEVKYTPSINQAGHTV-NIPVTVTYKDGSTDEVNAPIKVA 1219 Facklamia languida
WP_067977995  948 tGVVTYTPTEADAGKTV-EVPVVVTYADDSTDNVKAPIKVA 987  Aerococcus urinaehominis
WP_075732346 1236 -GRVRLTAPANAKVGSTaEVAVKVVYSDGSEDDTTATFTVT 1275 Corynebacterium phocae
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