5MYU,3J9O


Conserved Protein Domain Family
VipB_2

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pfam18945: VipB_2 (This model is not part of the current CDD release)
EvpB/VC_A0108, tail sheath gpW/gp25-like domain
EvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/VipB and TssB/TssC. On contact with another bacterial cell the sheath contracts and pushes the puncturing device and tube through the cell envelope and punches the target bacterial cell. This entry represents the gpW/gp25-like domain.
Statistics
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PSSM-Id: 523493
Aligned: 85 rows
Threshold Bit Score: 141.866
Created: 20-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5MYU_A                 318 EAETNYKL----GTQLPYMMIINRLAHYVKVLQREQIGAWKERQDLERELNSWIKQYVADQENPPADVRSRRPLRAARIE 393 Vibri...
9_pfamImport             1 EATANSRV----NARLPYIFLLSRIAHYLKLIQRENIGTTKDRRVLELELNTWIKTLVTEMTDPGDELQASHPLREAKVI 76 
Q7MZQ0                 394 EATANSRI----NARLPYIFLLSRIAHYLKLIQRENIGTTKDRRLLEIELNNWLNTLVTEMNDPTDDMQASHPLREAYVV 469 Photo...
goetting:EBL_c11490    397 DATANSRI----NARLPYIFLLSRIAHYLKMIQRENIGTTKDRRLLELELNTWVRSLVTEMTDPGDELQASHPLRDARVV 472
PRJNA210423:M911_00010 391 EATANSLV----NARLPYVMLVSRIAHYLKILQRENIGASKSRQVLEDELNQWLQTLVTRMKDPDPALVASHPLRDGRVS 466
Q3A0Q7                 397 EANANSMI----NARLPYIFLVSRLAHYLKVLQRENIGSSKSRQKLENELNAWIQTLVTKMKDPEPELIATHPLRDGQVT 472 Pelob...
WP_013662784           393 ADTANARI----NSRLPYIFLVSRIAQYLKILQRENIGSLKSRQDLENELNAWLQSLVTKMNNPEPELAATHPLKDGRVF 468 Marin...
WP_013135542           377 EAQLNYKL----GTQLPYLYAITRMSHYIKVLQREHIGSWRERADLERELNRWAKQYVANQENPTAEIRSKRPFKDIAIN 452 Arcob...
CBL44793               503 EAQTSSVTldhlSSRLPYLFIILRIAHYLKMICRDLIGSSASMADIEIELQRWLRRYVAEVENPSHAVRSRRPLKKASLT 582
WP_011768452           449 TQNIDTIA----SAQLQYLFIVMRIIHCLKIIFRESVGATTNSTELSHILNRWIRQFVSDVEAPSKSLRAQRPLKDAKVL 524 Psych...
5MYU_A                 394 VMDVEGNPGWYQVSLSVRPHFKYMGANFELSLVGRL 429 Vibrio cholerae
9_pfamImport            77 VEDIEDNPGFFRVKLFIVPHFQIEGMDINLSLVSQM 112
Q7MZQ0                 470 VEDIDDNPGFFRIKLYAVPHFQVEGIDVNLSLVSQM 505 Photorhabdus laumondii subsp. laumondii
goetting:EBL_c11490    473 VEDIEDNPGFFRVKLYAIPHFQVEGMDVNLSLVSRM 508
PRJNA210423:M911_00010 467 VEEIPENPGLYAVNLFVMPHFQIEGVDVRLSLVAQM 502
Q3A0Q7                 473 VREIPENPGYYSVDLFVRPHFQIEGVDVQLKLVAQM 508 Pelobacter carbinolicus DSM 2380
WP_013662784           469 VSESEDNPGYYFVNMHVQPHFQVEGVDVKLSLVSQM 504 Marinomonas mediterranea
WP_013135542           453 VEDVSTDPGWYKVRISLRPHFKYMGASFELSLVGKL 488 Arcobacter nitrofigilis
CBL44793               583 LSADPNYNGWMNIALSITPHMKYMDQDVTLNLDika 618
WP_011768452           525 VVET-NNIGWFEIEIELSPHMKYLGSTISINTLifm 559 Psychromonas ingrahamii
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